Figure 4. Phylogeny of pBI143 in human donors versus the phylogeny of bacterial isolates recovered from the same individuals.
pBI143 (left) and bacterial host (right) genome phylogenies. The pBI143 phylogeny was constructed using the MobA and RepA genes; the bacterial phylogeny was constructed using 38 ribosomal proteins (see Methods). Blue alluvial plots are isolates with Version 1 pBI143 and red alluvial plots are isolates with Version 2 pBI143. No isolates had the rarer Version 3. See also Table S1, S4.