Table 6.
The binding score, amino acid interactions, and bond lengths of compounds 5f and 7b within the active sites of the COX-2 enzyme.
Compound | Binding Score (kcal/mol) | Interaction | Bond Length (Ao) | Ligand Atom | Residue | Enzyme | PDB ID |
---|---|---|---|---|---|---|---|
Celecoxib | −11.0 | H-Bond | 1.98 | O of SO2NH2 | His90 | COX-2 | 1CX2 |
H-Bond | 2.24 | O of SO2NH2 | Arg513 | ||||
H-Bond | 2.26 | F of CF3 | Arg120 | ||||
5f | −8.7 | H-Bond | 2.89 | CO of COO− | His90 | COX-2 | 1CX2 |
H-Bond | 3.07 | O of COO− | Arg513 | ||||
H-Bond | 3.12 | O of COO− | Tyr355 | ||||
H-Bond | 2.28 | CO of CONH | Tyr385 | ||||
7b | −9.0 | H-Bond | 2.30 | O of COO− | His90 | COX-2 | 1CX2 |
H-Bond | 2.14 | O of COO− | Arg513 | ||||
Pi-sigma | 3.84 | phenoxy ring | leu352 |