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. 2024 Mar 15;29(6):1309. doi: 10.3390/molecules29061309

Table 6.

The binding score, amino acid interactions, and bond lengths of compounds 5f and 7b within the active sites of the COX-2 enzyme.

Compound Binding Score (kcal/mol) Interaction Bond Length (Ao) Ligand Atom Residue Enzyme PDB
ID
Celecoxib −11.0 H-Bond 1.98 O of SO2NH2 His90 COX-2 1CX2
H-Bond 2.24 O of SO2NH2 Arg513
H-Bond 2.26 F of CF3 Arg120
5f −8.7 H-Bond 2.89 CO of COO His90 COX-2 1CX2
H-Bond 3.07 O of COO Arg513
H-Bond 3.12 O of COO Tyr355
H-Bond 2.28 CO of CONH Tyr385
7b −9.0 H-Bond 2.30 O of COO His90 COX-2 1CX2
H-Bond 2.14 O of COO Arg513
Pi-sigma 3.84 phenoxy ring leu352