Figure 4.

Agreement across workflows with and without recommended parameters. (A–D) Agreement across workflows, without recommended parameters. (E–H) Agreement across workflows, with recommended parameters. (A,E) Agreement on Illumina SNP calls. (B,F) Agreement on Illumina InDel calls. (C,G) Agreement on Oxford Nanopore (ONT) SNP calls. (D,H) Agreement on ONT InDel Calls. For each figure, the bars indicate the number of variants called by the groups, indicated by filled circles below, across the whole dataset.