Table 1.
Summary of SaV reads detected in the pooled AFP samples.
| Sample ID | Deep Sequencing-Derived Reads and Sequences | Calicivirus Genotyping Tool Results | BLASTn Results | |||||
|---|---|---|---|---|---|---|---|---|
| Total Reads | SaV Reads | SaV Reads % | Nucleotide Length | VP1 Length | Type | Accession number of the Closest Hit | Pairwise Identity (%) | |
| AFP1-NGR | 16,751,880 | 51,665 | 0.31% | 7483 | 1677 | GII.4 | MN794218.1 | 91.29 |
| AFP10-NGR | 4,179,088 | 882 | 0.02% | 4554 | 1677 | GII.4 | MN794218.1 | 91.17 |
| AFP15-NGR | 23,759,398 | 24,255 | 0.1% | 7502 | 1667 | GII.8 | MT561022.1 | 95.36 |
| AFP18-NGR | 7,378,192 | 1777 | 0.02% | 7456 | 1656 | GIV.1 | DQ125333.1 | 94.27 |
| AFP20-NGR | 10,079,418 | 53 | 0% | 1819 | 1439 | GI.2 | MN486489.1 | 97.08 |
| AFP33-NGR | 11,500,814 | 83,736 | 0.73% | 7494 | 1656 | GIV.1 | DQ104357.2 | 94.43 |
| AFP39-NGR | 13,103,440 | 41,026 | 0.31% | 7526 | 1676 | GII.4 | AB429084.2 | 91.06 |
| AFP46-NGR | 22,571,328 | 544,044 | 2.41% | 7524 | 1698 | GI.7 | AB258428.1 | 90.76 |
Abbreviations: Nigeria, NGR; Acute Flaccid Paralysis, AFP; Sapovirus, SaV.; pairwise nucleotide identity with the top matching reference sequences for the VP1 region using BLASTn.