Table 2.
Strain | NTpase GAPGIGKT |
VPg (KGKTK And DDEYDE |
Protease (GDCG) |
RdRp (WKGL, KDEL, DYSKWDST, GLPSG and YGDD) | VP1 (PPG and GWS) |
---|---|---|---|---|---|
SaV-A14-AFP1-NGR-2020 | 481PPGIGKT |
936KGKK And 953DDEYDE |
1169GDCG | 1213WKGL, 1374KDEL, 1449DYSKWDST, 1504GLPSG and 1552YGDD | 1856PPG and 2000GWS |
SaV-A16-AFP15-NGR-2020 | 465PPGIGKT |
927KGKTK And 948DDEYDE |
1154GDCG | 1198WKGL, 1359KDEL, 1434DYSKWDST, 1489GLPSG and 1537YGDD | 1841PPG and 1987GWS |
SaV-A18-AFP18-NGR-2020 | 481PPGIGKT |
942KGKTK And 963DDEYDE |
1169GDCG | 1213WKGL, 1374KDEL, 1449DYSKWDST, 1504GLPSG and 1552YGDD | 1851PPG and 1996GWS |
SaV-A36-AFP33-NGR-2020 | 481PPGIGKT |
942KGKTK And 963DDEYDE |
1169GDCG | 1213WKGL, 1374KDEL, 1449DYSKWDST, 1504GLPSG and 1552YGDD | 1851PPG and 1996GWS |
SaV-A143-AFP39-NGR-2020 | 481PPGIGKT |
942KGKTK And 963DDEYDE |
1169GDCG | 1213WKGL, 1374KDEL, 1449DYSKWDST, 1504GLPSG and 1552YGDD | 1856PPG and 2001GWS |
SaV-A143-AFP46-NGR-2020 | 479PPGIGKT |
940KGKK And 961DDEYDE |
1167GDCG | 1211WKGL, 1373KDEL, 1448DYSKWDST, 1503GLPSG and 1552YGDD | 1855PPG and 2000GWS |
The substitution observed in NS3 and NS5 motifs are highlighted in red box.