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. 2024 Mar 19;13(3):264. doi: 10.3390/pathogens13030264

Table 2.

Typical motifs of functional proteins of SaV detected in the pooled AFP samples.

Strain NTpase
GAPGIGKT
VPg (KGKTK
And DDEYDE
Protease
(GDCG)
RdRp (WKGL, KDEL, DYSKWDST, GLPSG and YGDD) VP1 (PPG and GWS)
SaV-A14-AFP1-NGR-2020 481GPPGIGKT 936KGKNK
And 953DDEYDE
1169GDCG 1213WKGL, 1374KDEL, 1449DYSKWDST, 1504GLPSG and 1552YGDD 1856PPG and 2000GWS
SaV-A16-AFP15-NGR-2020 465GPPGIGKT 927KGKTK
And 948DDEYDE
1154GDCG 1198WKGL, 1359KDEL, 1434DYSKWDST, 1489GLPSG and 1537YGDD 1841PPG and 1987GWS
SaV-A18-AFP18-NGR-2020 481GPPGIGKT 942KGKTK
And 963DDEYDE
1169GDCG 1213WKGL, 1374KDEL, 1449DYSKWDST, 1504GLPSG and 1552YGDD 1851PPG and 1996GWS
SaV-A36-AFP33-NGR-2020 481GPPGIGKT 942KGKTK
And 963DDEYDE
1169GDCG 1213WKGL, 1374KDEL, 1449DYSKWDST, 1504GLPSG and 1552YGDD 1851PPG and 1996GWS
SaV-A143-AFP39-NGR-2020 481GPPGIGKT 942KGKTK
And 963DDEYDE
1169GDCG 1213WKGL, 1374KDEL, 1449DYSKWDST, 1504GLPSG and 1552YGDD 1856PPG and 2001GWS
SaV-A143-AFP46-NGR-2020 479GPPGIGKT 940KGKNK
And 961DDEYDE
1167GDCG 1211WKGL, 1373KDEL, 1448DYSKWDST, 1503GLPSG and 1552YGDD 1855PPG and 2000GWS

The substitution observed in NS3 and NS5 motifs are highlighted in red box.