Table 1. Substitutions of Amino Acid Residues Between Genogroups A and B of CVB5, and Description of Mutants Produced in this study.
genogroup A |
genogroup B | ||||||||
---|---|---|---|---|---|---|---|---|---|
protein | residuea | locationb | (n = 7) | Faulkner | (n = 6) | at the capsid surface | Met invloved | mutants generated in this study | name of mutantc |
VP1 | 19 | interior | G | G | S | ||||
VP1 | 95 | interior | S | N | N | ||||
VP1 | 156 | EF loop | V | V | I | x | x | CVB5F.cas.VP1.V156I | |
VP1 | 180 | buried, hydrophobic pocket | M | M | I | x | x | CVB5F.cas.VP1.M180I | |
VP1 | 276 | C-terminal | D | D | E | x | x | CVB5F.cas.VP1.D276E | |
VP1 | 279 | C-terminal | T | T | A | x | x | CVB5F.cas.VP1.T279A | |
VP2 | 37 | interior | V | V | T | ||||
VP2 | 45 | interior | D | D | E | ||||
VP2 | 137 | EF loop (puff) | L | L | I | x | x | CVB5F.cas.VP2.L137I | |
VP2 | 156 | EF loop (puff) | E | E | D | x | x | CVB5F.cas.VP2.E156D | |
VP2 | 160 | EF loop (puff) | S | S | T | x | x | CVB5F.cas.VP2.S160T | |
VP2 | 260 | C-terminal | K | K | R | x | x | CVB5F.cas.VP2.K260R | |
VP3 | 35 | interior | E/N/Dd | E | A | ||||
VP3 | 63e | N-terminal helix close to β-strand B (knob) | M/Ld | M | S/Td | x | x | x | CVB5F.cas.VP3.M63L |
VP3 | 67f | N-terminal helix close to β-strand B (knob) | S/A | A | A | ||||
VP3 | 88 | CD loop | T/M/Id | T | I | x | x | CVB5F.cas.VP3.T88I | |
VP4 | 17 | disordered | L | L | V | ||||
VP4 | 45 | interior | D | D | E | ||||
VP4 | 47 | interior | T | T | A | ||||
VP1–4 | all of the above excepte,f | CVB5F.cas.genogroupB |
The numbering of amino acids is according to the residue positions in the CVB5 Faulkner.63
CVB5F.cas corresponds to the Faulkner strain with a ClaI restriction site introduced at a non-structural protein region (nucleotide position 3340).
Multiple amino acid residues were observed within the genogroup.
Strains belonging to genogroup B do not possess single specific amino acids.
The same amino acid residue is observed for CVB5 Faulkner and strains belonging to genogroup B.