Table 2.
"Commercial Wine Strain Signature" Gene Lista
| Sig. amplified in at least 3 strains | Montrachet | French Red | Champagne | Prise de Mousse | |
| YAR066W | 0.84 | 1.43 | 0.62 | 0.19 | |
| YAR068W | 1.05 | 1.67 | 0.91 | 0.52 | |
| YAR069C | 1.11 | 1.57 | 1.09 | 0.59 | |
| YAR070C | 1.14 | 1.62 | 1.16 | 0.63 | |
| YAR071W | PHO11 | 1.01 | 1.37 | 1.26 | 0.57 |
| YAR073W | IMD1 | 0.99 | 1.41 | 1.34 | 0.56 |
| YAR075W | 0.98 | 1.47 | 1.46 | 0.56 | |
| YPL276W | 0.59 | 1.36 | 1.64 | 0.75 | |
| YPL275W | FDH2 | 0.63 | 1.39 | 1.68 | 0.78 |
| YPL274W | SAM3 | 0.58 | 1.06 | 1.31 | 0.66 |
| YPL273W | SAM4 | 0.52 | 0.81 | 1.04 | 0.57 |
| YPL272C | 0.49 | 0.59 | 0.79 | 0.47 | |
| Sig. depleted in at least 3 strains | Montrachet | French Red | Champagne | Prise de Mousse | |
| YAR007C | RFA1 | -0.44 | -0.73 | -0.80 | -0.31 |
| YAR008W | SEN34 | -1.05 | -1.53 | -1.31 | -0.69 |
| YAR014C | BUD14 | -1.03 | -1.25 | -0.99 | -0.65 |
| YAR015W | ADE1 | -0.54 | -0.63 | -0.64 | -0.38 |
| YBL007C | SLA1 | -0.51 | -0.61 | -0.81 | -0.39 |
| YBL006C | LDB7 | -0.86 | -0.99 | -1.02 | -0.66 |
| YBL005W | PDR3 | -0.88 | -1.07 | -1.10 | -0.67 |
| YBR013C | -0.97 | -1.58 | -1.04 | -0.45 | |
| YHR052W | CIC1 | -0.39 | -0.89 | -1.40 | -0.78 |
| YHR053C | CUP1-1 | -0.46 | -1.32 | -1.91 | -1.07 |
| YHR054C | -0.56 | -1.65 | -2.16 | -1.29 | |
| YHR055C | CUP1-2 | -0.56 | -1.43 | -1.98 | -1.26 |
| YHR056C | RSC30 | -0.49 | -1.10 | -1.52 | -0.96 |
| YJR024C | -0.59 | -0.62 | -0.49 | -0.30 | |
| YJR025C | BNA1 | -0.91 | -1.13 | -0.84 | -0.53 |
| YJR026W | -1.47 | -1.92 | -1.41 | -0.90 | |
| YJR030C | -0.95 | -1.65 | -1.32 | -0.67 | |
| YJR031C | GEA1 | -0.41 | -0.90 | -0.78 | -0.32 |
| YJR032W | CPR7 | -0.16 | -0.31 | -0.39 | -0.15 |
| YJR033C | RAV1 | -0.14 | -0.32 | -0.39 | -0.11 |
| YML047C | PRM6 | -0.46 | -0.89 | -0.91 | -0.25 |
| YML046W | PRP39 | -0.51 | -1.16 | -1.19 | -0.31 |
| YML043C | RRN11 | -0.49 | -0.99 | -1.05 | -0.33 |
| YML042W | CAT2 | -0.83 | -1.33 | -1.16 | -0.51 |
| YML041C | VPS71 | -0.93 | -1.35 | -1.18 | -0.58 |
| YML038C | YMD8 | -0.84 | -1.39 | -1.16 | -0.46 |
| YML037C | -0.47 | -0.97 | -0.93 | -0.23 | |
| YMR043W | MCM1 | -0.30 | -0.28 | -0.30 | -0.23 |
| YMR044W | IOC4 | -0.81 | -0.98 | -0.82 | -0.59 |
| YMR046W-A | -1.14 | -1.58 | -1.29 | -0.78 | |
| YMR047C | NUP116 | -0.70 | -0.96 | -0.88 | -0.56 |
| YMR048W | CSM3 | -0.69 | -0.89 | -0.75 | -0.46 |
| YMR049C | ERB1 | -1.07 | -1.45 | -1.03 | -0.66 |
| YMR052W | FAR3 | -1.17 | -1.87 | -1.28 | -0.63 |
| YMR052C-A | -0.69 | -1.26 | -0.89 | -0.36 | |
| YOL165C | AAD15 | -1.09 | -1.03 | -0.74 | -0.80 |
| YOL164W | -1.33 | -1.24 | -0.96 | -0.80 |
a The data shown in this table are the actual mean log2(R/G) ratios for each gene, calculated by averaging the values from the six arrays (duplicate arrays of each of the three isolates of each strain) hybridized per wine strain. This list represents the wine-specific subset of the total set of genes with significant copy number changes, as described in the text. Values shown in bold text were determined by the CGH-Miner program to be significantly depleted or amplified as indicated. Values not significantly depleted or amplified are shown in non-bold italicized text.