TABLE 2.
Synthetic oligonucleotides used for nucleotide sequence determination of FMDV genomes
| Oligonucleotide sequence (5′ to 3′) | Positiona | Orientation |
|---|---|---|
| TTGAAAGGGGGCGCTAGGGTC | 1 | Sense |
| CAGCGCTAACAACCAAGTAG | 236 | Antisense |
| GTTAACTGAAAGGCGGGTTTCGGGTG | 367 | Antisense |
| TAAGTTTTACCGTCTGTCCCG | 368 | Sense |
| CACGATCTAAGCAGGTTTCC | 569 | Sense |
| TGTCAGTTGGGGAAACCTGC | 599 | Antisense |
| CTTGGTAACAAGGACCCAC | 750 | Sense |
| CGGAGGTCGGCACCTTTCCTTTAC | 1002 | Sense |
| GCCTTCCACCCTTCATTGAGTGGC | 1619 | Antisense |
| AACCAGTCGTTGGTCTGG | 1844 | Antisense |
| CAACCTTGTGCATGTGTCC | 2140 | Antisense |
| GGGTTGATGAACTGGTGGGG | 2345 | Antisense |
| CAGTTGTCACCATGTTGCC | 2602 | Antisense |
| CTTGGCCGGTTTGGCCCAGTAC | 2817 | Sense |
| GTACTGTGTGTAGTACTGCGC | 2850 | Antisense |
| GTTTCAGCCTCGTGGGACGC | 3077 | Antisense |
| CTTGTGGTAGGCAGTGGGATTGG TTGTGTTGTTAAGTG | 3534 | Antisense |
| ACACCGTGTGTTGGCTACGGCG | 3573 | Sense |
| CTGCACCAAAGTTGAACGAT | 3697 | Antisense |
| GAGAAGAAGAAGGGCCCAGGGTT GGACT | 3896 | Antisense |
| CAAACGTGCTGTCCAGAATCTC | 4189 | Antisense |
| GAAGACCTTGAGAGAGCAGAG | 4338 | Sense |
| CTCTTCTGAGGCGATCCATGC | 4158 | Antisense |
| CGCTCACGTCGATGTCAAAGTG | 5047 | Antisense |
| AAAGGCCAACACGAGGCAGC | 5363 | Sense |
| GAGTCGTGTACCATGCCCTC | 5396 | Antisense |
| GAACTCTTCCAGGTCAGAAGGC | 5677 | Sense |
| GTAAGTGGTGCCCCACCGACCGAC | 5971 | Sense |
| CATGACCATCTTTTGCAGGTCAG | 6009 | Antisense |
| CCCCCGTCGTTGGCGTGATTAAC | 6308 | Sense |
| GGGTTGATCGTTGATACCAGAGA | 6610 | Sense |
| ACCACTGCAGCGATGCCATGAAC | 7349 | Sense |
| GGCATCGCTGCAGTGGTTTGC | 7365 | Antisense |
| CTTGCCACCACGATGTCGTC | 7640 | Antisense |
| GGATTAAGGAAGCCGGGAAAGCCC | 8115 | Antisense |
a
Positions refer to the C-S8c1 genomic residues, numbered as described in Materials and Methods (20).