Table 2.
CpG sites from EWAS of body mass index and gestational weight gain significant after Bonferroni correction.
| CpG-site | Chromosome | Position | Location in relation to gene | β | SE | p-value | Associated gene+ | Gene summary ** |
|---|---|---|---|---|---|---|---|---|
| EWAS of body mass index, meta-analysis approach | ||||||||
| cg02786370* | 4 | 2,747,928 | Open sea | −0.02 | 0.0031 | 2.12 × 10−10 | TNIP2 | NCBI gene ID 79155. Encodes a protein that inhibits NfkappaB-activation, is involved in MAP/ERK-signaling pathway in some cells, and could be involved in endothelial cell apoptosis. |
| Cg19758958* | 11 | 62,319,222 | Open sea | −0.01 | 0.0018 | 1.12 × 10−9 | Promoter region of AHNAC | NCBI gene ID 79026. Encodes a structural scaffold protein that may play a role in blood-brain barrier formation, cell structure and migration, cardiac calcium channel regulation, and tumor metastasis |
| cg10472537* | 2 | 105,348,800 | Open sea | −0.01 | 0.002 | 2.05 × 10−8 | Unannotated | |
| cg16444328 | 5 | 171,279,429 | Open sea | −0.01 | 0.0015 | 3.76 × 10−8 | Unannotated | |
| cg24911837 | 7 | 65,227,864 | North shore | −0.01 | 0.0024 | 3.96 × 10−8 | CCT6P1 | NCBI gene ID 643253. No summary of function available |
| EWAS of gestational weight gain, meta-analysis approach | ||||||||
| cg16733643 | 1 | 41,575,522 | Open sea | −0.35 | 0.065 | 5.82 × 10−8 | SCMH1 | NCBI gene ID 22955. Encodes a protein that is predicted to impact chromatin and histone binding activity and thereby negatively impact transcription of DNA. |
| EWAS of body mass index, European ancestry | ||||||||
| cg02786370 | 4 | 2,747,928 | Open sea | −0.02 | 0.0031 | 2.12 × 10−10 | TNIP2 | NCBI gene ID 79155. Encodes a protein that inhibits NfkappaB-activation, is involved in MAP/ERK-signaling pathway in some cells, and could be involved in endothelial cell apoptosis. |
| cg19877790 | 13 | 35,009,671 | Open sea | −0.01 | 0.0034 | 2,09 × 10−8 | LINC00457 | NCBI gene ID 100874179. Non protein coding RNA. |
Chr chromosome, Pos position, + From the EWAS catalog.
*Replicated in The Norwegian Mother, Father and Child Cohort Study of Assisted Reproductive Technology (MoBa-START), using body mass index at week 30, p < 0.05.
**Genome Reference Consortium Human Build 37.