Table 2.
Comparison of TSABC inference for μ using different IBD length thresholds. Each result is an average over 25 Model C simulation replicates with m = 10 and ϵ = 0. In the last column, values based only on IBDs in the efficient subset are given in ().
| Threshold (104 bp) | 4 | 2 | 1 | 0 | |
|---|---|---|---|---|---|
| inferred IBD | |||||
| # IBD | 1 001 | 7 033 | 24 683 | (10 667) | |
| 1.51 | 1.44 | 1.32 | (1.31) | ||
| SD (10−8) | 0.219 | 0.167 | 0.067 | (0.043) | |
| true IBD | |||||
| # IBD | 478 | 1 803 | 6 940 | (26 394) | |
| 1.33 | 1.30 | 1.31 | (1.29) | ||
| SD (10−8) | 0.141 | 0.089 | 0.064 | (0.034) | |