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[Preprint]. 2024 Mar 11:2024.03.06.583803. [Version 1] doi: 10.1101/2024.03.06.583803

Table 2.

Benchmarks of the DAT QSAR models trained with the XGBoost algorithm

release binding Ki
R2 MSE Rp Rs
ChEMBL33 0.77 0.03 0.35 0.04 0.88 0.02 0.86 0.02
ChEMBL31 0.77 0.04 0.37 0.06 0.88 0.02 0.86 0.03
ChEMBL29 0.75 0.03 0.42 0.07 0.87 0.02 0.85 0.02
ChEMBL27 0.74 0.03 0.43 0.06 0.86 0.02 0.85 0.02
ChEMBL25 0.72 0.04 0.43 0.08 0.85 0.03 0.85 0.03

We construct 10 distinct QSAR models for each indicated ChEMBL release to mitigate any stochastic effects. For each reported metric, the first value is the average across the 10 QSAR models, which is followed by the standard deviation.