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Distance thresholds and key network properties using four different HIV-1 genomic regions, stratified by subtype (minumum 500 sequences)
| Subtype | N | AUTO-TUNE D, subs/site | Number of clusters | Full agreement Clusters | Krippendorff α | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| pr+rt | integrase | gag | gp41 | pr+rt | integrase | gag | gp41 | ||||
| B | 1843 | 0.02081 | 2.0005 | 3.137 | 5.095 | 115 | 128 | 119 | 144 | 64 | 0.723 |
| C | 877 | 0.03266 | 0.02 | 4.754 | 5.325 | 44 | 35 | 47 | 46 | 21 | 0.588 |
| CRF01/AE | 624 | 0.01635 | 0.818 | 2.285 | 2.037 | 40 | 30 | 40 | 41 | 12 | 0.610 |
