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[Preprint]. 2024 Mar 13:2024.03.12.584676. [Version 1] doi: 10.1101/2024.03.12.584676

Extended Data Fig. 4. Surface conservation and electrostatic property.

Extended Data Fig. 4

a-b. Overall surface conservation (a) and electrostatic potentials (b) of Retriever complexed with SNX17 CT peptide (shown in cartoon presentation). Surface conservation was calculated with ConSurf33, with color-to-white gradients representing the most (ConSurf score = 9) to the least conserved residues (ConSurf score = 1) following the same color scheme used in Fig. 2c, d. CCDC22-CCDC93 VBD model derived from AlphaFold-Multimer predictions are shown as semi-transparent cartoon presentation as a reference. c. Cartoon presentation (left) and surface presentation of electrostatic potentials (right) of Retromer, showing the binding sites for indicated ligands.