REAGENT or RESOURCE	SOURCE	IDENTIFIER
Deposited data
Swimming Downstream simulation	Love et al.34	https://zenodo.org/record/1291522
satuRn GTEx simulation	Gilis et al.30	https://zenodo.org/records/6826603
20 simulated GTEx experiments	This paper	https://zenodo.org/record/8128846
Quantification files for the GTEx samples used in the tissue-dependent DTU detection	This paper	https://zenodo.org/record/8128945
The RNA-Seq data used in the Schizophrenia analysis	Collado-Torres et al.45	http://eqtl.brainseq.org/phase2/
Software and algorithms
SPIT	This paper	https://github.com/berilerdogdu/SPIT https://doi.org/10.5281/zenodo.10695079
DRIMSeq	Nowicka and Robinson29	https://bioconductor.org/packages/release/bioc/html/DRIMSeq.html
DEXSeq	Anders et al.28	https://bioconductor.org/packages/release/bioc/html/DEXSeq.html
satuRn	Gilis et al.30	https://www.bioconductor.org/packages/devel/bioc/vignettes/satuRn/inst/doc/Vignette.html
limma diffSplice	Smyth32	https://bioconductor.org/packages/release/bioc/html/limma.html
edgeR diffSplice	Chen et al.31	https://bioconductor.org/packages/release/bioc/html/edgeR.html
swish	Zhu et al.23	https://bioconductor.org/packages/release/bioc/vignettes/fishpond/inst/doc/swish.html