TABLE 5.
Isolate | Country | FDC MIC (mg/L) | ST | Potential resistance mechanism(s) identified | ||||||
---|---|---|---|---|---|---|---|---|---|---|
β-Lactamasec | ftsl | oprD | piuA | piuC | pirA-like | pvdS | ||||
1 | France | 8 | 4291d | OXA-396; PDC-543 | WT | No gross disruption | Gene not found | Gene not found | A370T | WT |
2 | France | 4 | 773 | OXA-395; PDC-16; NDM-1 | WT | No gross disruption | Q34H | R201H | A370T | V180L; H182N |
3 | France | 8 | 235 | OXA-19; OXA-488; PDC-35 | WT | No gross disruption | piuD | R201H | S20N; T235I; A370T |
V180L; H182N |
4 | Germany | 4 | 298 | OXA-848; PDC-219 | A244T | Gross disruption | piuD | R201H | Gross disruption | V26A |
5 | Germany | 8 | 4290d | OXA-1124; PDC-86 | WT | No gross disruption | Q34H | T10S; R201H |
A13V; A370T | V180L; H182N |
6 | Italy | 8 | 708 | OXA-50; PDC-446 | WT | No gross disruption | Q34H | WT | R7H; A370T; Q620K |
V180L; T181A; H182N |
7 | Italy | 16 | 4305d | OXA-488; PDC-337 | WT | No gross disruption | Q34H | R201H | A370T | WT |
8 | Spain | 4 | 4304d | OXA-1022; PDC-46 | V137M | Gross disruption | Q34H | R201H | Y2S; A370T | WT |
9 | Spain | 4 | 4306d | OXA-1188; PDC-5 | WT | No gross disruption | piuD | V104I | A370T | V180L; T181A; H182N; R186P |
10 | UK | 4 | 4283d | OXA-1135; PDC-63 | WT | No gross disruption | Gene not found | D49E; E125A; R198Q; V203I | T144S; A208T; A370T; T480A | WT |
FDC, cefiderocol; MBL, metallo-β-lactamase; NDM, New Delhi MBL; OXA, oxacillinase; PDC, Pseudomonas-derived cephalosporinase; ST, sequence type; UK, United Kingdom; WT, wild type.
Data were generated by whole-genome sequencing. A gene was considered to have a gross disruption if the coding sequence carried a nonsense mutation, frameshift, indels of >20 codons, or ablation of the canonical stop or start codons without a replacement immediately adjacent and in-frame. Genes were listed to be not found if a BLAST search with the reference gene yielded no hit with E-value <1E-25. Non-β-lactamase genes that were either found to have gross disruptions or mutations or were not found are shown in gray.
Data shown are a curated summary.
Indicates a novel ST.