Table 2. Sum of ESP Charges for Each Residues and Water Molecules in the HBN Obtained in QM/MM Calculations Using QM1, QM2, QM3, or QM4 as the QM Region.
| R82 | D85 | T89 | D212 | PSBa | RETb | Wat401 | Wat402 | Wat406 | other | |
|---|---|---|---|---|---|---|---|---|---|---|
| QM1 | 0.98 | –0.81 | –0.91 | 0.55 | 0.33 | –0.08 | –0.05 | 0.00 | 0.00 | |
| QM2 | 0.96 | –0.71 | –0.11 | –0.68 | 0.54 | 0.35 | –0.10 | –0.04 | –0.07 | –0.15 |
| QM3 | 0.95 | –0.73 | –0.10 | –0.62 | 0.56 | 0.29 | –0.10 | –0.05 | –0.06 | –0.14 |
| QM4 | 0.98 | –0.71 | –0.11 | –0.71 | 0.54 | 0.35 | –0.09 | –0.04 | –0.05 | –1.15 |
Cγ, Cδ, Cε, Nζ, C1, and their hydrogen atoms (13 atoms).
Retinal (46 atoms).