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. 2021 Jul 23;17(8):5007–5020. doi: 10.1021/acs.jctc.1c00060

Table 2. Sum of ESP Charges for Each Residues and Water Molecules in the HBN Obtained in QM/MM Calculations Using QM1, QM2, QM3, or QM4 as the QM Region.

  R82 D85 T89 D212 PSBa RETb Wat401 Wat402 Wat406 other
QM1 0.98 –0.81   –0.91 0.55 0.33 –0.08 –0.05 0.00 0.00
QM2 0.96 –0.71 –0.11 –0.68 0.54 0.35 –0.10 –0.04 –0.07 –0.15
QM3 0.95 –0.73 –0.10 –0.62 0.56 0.29 –0.10 –0.05 –0.06 –0.14
QM4 0.98 –0.71 –0.11 –0.71 0.54 0.35 –0.09 –0.04 –0.05 –1.15
a

Cγ, Cδ, Cε, Nζ, C1, and their hydrogen atoms (13 atoms).

b

Retinal (46 atoms).