Table 3.
Comparison results of predictors for bitter/non-bitter and bitter/sweet prediction.
| Classification Type | Model | Algorithm | Input | TN | FP | FN | TP | TPR | TNR | PRE | ACC | AP | F1 | MCC | AUC |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Bitter/Non-bitter | BoCNN | CNN | Molecular Figure | 132 | 31 | 33 | 82 | 0.71 | 0.81 | 0.73 | 0.77 | 0.64 | 0.72 | 0.52 | 0.76 |
| BoMLP | MLP | Descriptors | 119 | 44 | 33 | 82 | 0.71 | 0.73 | 0.65 | 0.72 | 0.58 | 0.68 | 0.44 | 0.72 | |
| BoMLP | MLP | RDKFP | 141 | 22 | 16 | 99 | 0.86 | 0.86 | 0.82 | 0.86 | 0.76 | 0.84 | 0.72 | 0.86 | |
| BitterPredict | Adapt Boost | Descriptors | 133 | 30 | 32 | 83 | 0.72 | 0.82 | 0.73 | 0.78 | 0.65 | 0.73 | 0.54 | 0.77 | |
| VisualTaste | Random Forest | Descriptors | 95 | 68 | 20 | 95 | 0.83 | 0.58 | 0.58 | 0.68 | 0.55 | 0.68 | 0.41 | 0.7 | |
| BitterX | SVM | Descriptors | 38 | 125 | 18 | 97 | 0.84 | 0.23 | 0.44 | 0.49 | 0.43 | 0.58 | 0.09 | 0.54 | |
| HGNN | GNN | Atom and Bond Feature | 121 | 42 | 12 | 103 | 0.9 | 0.74 | 0.71 | 0.81 | 0.68 | 0.79 | 0.63 | 0.82 | |
| WLN | GNN | Atom and Bond Feature | 140 | 23 | 14 | 101 | 0.88 | 0.86 | 0.81 | 0.87 | 0.77 | 0.84 | 0.73 | 0.87 | |
| AttentiveFP | GNN | Atom and Bond Feature | 150 | 13 | 24 | 91 | 0.79 | 0.92 | 0.88 | 0.87 | 0.78 | 0.83 | 0.72 | 0.86 | |
| GraphSAGE | GNN | Atom Feature | 146 | 17 | 18 | 97 | 0.84 | 0.9 | 0.85 | 0.87 | 0.78 | 0.85 | 0.74 | 0.87 | |
| Bitter/Sweet | BoCNN | CNN | Molecular Figure | 114 | 25 | 29 | 86 | 0.75 | 0.82 | 0.78 | 0.79 | 0.69 | 0.76 | 0.57 | 0.78 |
| BoMLP | MLP | Descriptors | 108 | 31 | 37 | 78 | 0.68 | 0.78 | 0.72 | 0.73 | 0.63 | 0.7 | 0.46 | 0.73 | |
| BoMLP | MLP | RDKFP | 126 | 13 | 23 | 92 | 0.8 | 0.91 | 0.88 | 0.86 | 0.79 | 0.84 | 0.71 | 0.85 | |
| HGNN | GNN | Atom and Bond Feature | 122 | 17 | 18 | 97 | 0.84 | 0.88 | 0.85 | 0.86 | 0.79 | 0.85 | 0.72 | 0.86 | |
| WLN | GNN | Atom and Bond Feature | 122 | 17 | 21 | 94 | 0.82 | 0.88 | 0.85 | 0.85 | 0.77 | 0.83 | 0.7 | 0.85 | |
| AttentiveFP | GNN | Atom and Bond Feature | 130 | 9 | 22 | 93 | 0.81 | 0.94 | 0.91 | 0.88 | 0.82 | 0.86 | 0.76 | 0.87 | |
| GraphSAGE | GNN | Atom Feature | 127 | 12 | 22 | 93 | 0.81 | 0.91 | 0.89 | 0.87 | 0.8 | 0.85 | 0.73 | 0.86 |