Table 1.
Comparative performance of Trimmomatic‐0.39, fastp 0.20.0, and fastp 0.23.2.
| ID | Platform | File size (GB) | Bases (billion) | Trimmomatic‐0.39 | Fastp 0.20.0 | Fastp 0.23.2 |
|---|---|---|---|---|---|---|
| S1 | MGI | 33.670 | 99.577 | 3:51:02 | 0:42:38 | 0:25:15 |
| 34.079 | ||||||
| S2 | Illumina | 6.926 | 29.380 | 0:56:23 | 0:12:06 | 0:06:01 |
| 7.111 | ||||||
| S3 | MGI | 15.659 | 40.448 | 1:39:50 | 0:19:10 | 0:10:50 |
| 13.373 | ||||||
| S4 | MGI | 6.512 | 16.401 | 0:41:13 | 0:08:00 | 0:04:26 |
| 5.447 | ||||||
| S5 | Illumina | 4.160 | 17.625 | 0:33:43 | 0:11:12 | 0:03:44 |
| 4.336 | ||||||
| S6 | Illumina | 1.310 | 5.557 | 0:10:17 | 0:02:04 | 0:01:09 |
| 1.348 | ||||||
| S7 | MGI | 2.929 | 7.909 | 0:19:57 | 0:03:51 | 0:02:09 |
| 2.752 | ||||||
| S8 | MGI | 1.595 | 4.090 | 0:10:09 | 0:01:49 | 0:01:07 |
| 1.360 | ||||||
| S9 | MGI | 20.200 | 57.615 | 2:21:14 | 0:31:39 | 0:15:14 |
| 18.727 | ||||||
| S10 | MGI | 0.861 | 3.677 | 0:06:43 | 0:01:21 | 0:00:44 |
| 0.891 | ||||||
| S11 | Illumina | 9.359 | 41.674 | 1:13:16 | 0:17:41 | 0:07:37 |
| 9.462 |