Table 1.

Troubleshooting table

Step	Problem	Possible reason	Solutions
All	Tool does not start to run	Too many programs running within the account or in the server	Wait till the program finishes or stop the previous program
	Error messages	Selected wrong input file	Check with the file format with reference file in Box 1 and example files in the pipeline. Follow the protocol steps accordingly
1	Empty results	High majority	Decrease the majority
2, 4, 7, 12	Large species numbers	Too many species	Decrease the species numbers for the import file or run the program locally
	Less sample numbers	Sample numbers less than eight	Increase the number of replicates for the samples
3, 5, 10, 14	Empty results	No result for the provided selection criterion	Downscale selection criterion, for example, lower threshold
23, 24, 32, 33	Empty results	Inconsistent sample names in the input file	Manually check the sample names for the input files and name formats in Box 1