Table 2.
Functions, Length, Direction and Sequences of HaCCO cis-elements
| Cis-Element | Sequence | Length | Direction | Function |
|---|---|---|---|---|
| AAGAA-motif | GGTAAAGAAA | 10 | + | interactions with specific transcription factors or RNA-binding proteins |
| ABRE | ACGTG | 5 | - | cis-acting element involved in the abscisic acid responsiveness |
| Box 4 | ATTAAT | 6 | + | part of a conserved DNA module involved in light responsiveness |
| G-box | CACGTC | 6 | + | cis-acting regulatory element involved in light responsiveness |
| O2-site | GATGA(C/T)(A/G)TG(A/G) | 10 | + | involved in zein metabolism regulation |
| TCCC-motif | TCTCCCT | 7 | - | part of a light responsive element |
| TCT-motif | TCTTAC | 6 | - | part of a light responsive element |
| ARE | AAACCA | 6 | + | essential for the anaerobic induction |
| F-box | CTATTCTCATT | 10 | + | involved in cellular development |
| GT1-motif | GTGTGTGAA | 9 | - | light responsive element |
| CGTCA-motif | CGTCA | 5 | - | involved in the MeJA-responsiveness |
| MRE | AACCTAA | 7 | - | MYB binding site involved in light responsiveness |
| TGACG-motif | TGACG | 5 | + | involved in the MeJA-responsiveness |
| P-box | CCTTTTG | 7 | - | gibberellin-responsive element |
| W box | TTGACC | 6 | + | inducing plant genes in response to pathogen attack and acts as a binding site for WRKY TFs |
| AE-box | AGAAACTT | 8 | + | part of a module for light response |
| TCA-element | CCATCTTTTT | 10 | - | cis-acting element involved in salicylic acid responsiveness |
| A-box | CCGTCC | 6 | + | part of a light responsive element |