Table 3.

Resource usage

Component	Total CPU hours	Tasks run	Most expensive process	CPUs allocated	Mean RAM	Mean runtime (min)
Prophage search	13 526.3	2099	nhmmer	2	36.8 GB	412.5
Bacterial gene annotation	398.8	1072	Prokka	6	901.2 MB	3.5
Viral protein annotation	49.7	539	BATH	2	403.5 MB	8.6

CPUs allocated, mean RAM and mean runtime all display values for the most expensive process in each component, as the computational cost of other elements was negligible. GB stands for gigabyte and MB stands for megabyte.