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. 2024 Mar 22;15:1377238. doi: 10.3389/fgene.2024.1377238

TABLE 3.

Genomic spatial structure alterations in B cells and macrophages during disease or a certain reaction.

Cell type Disease or a certain reaction Genomic spatial structure alterations
Macrophage Anti-tuberculosis infection The super-enhancer immunogenomic GBP interaction is strong, and NF-κB binds to the enhancer and promoter loops of the PD-L1 gene
Anti-infection response IRF1 increases the chromatin accessibility of ISG gene loci in macrophages
Prostate cancer The development of malignant tumors is associated with the enrichment of YY1 and H3K27ac at the IL-6 gene enhancer site
Systemic Lupus Erythematosus The occurrence of the disease is related to the binding of IFN-α and TNF, which leads to the opening of tolerant gene loci, resulting in the appearance of tolerant monocytes
B cell Diffuse large B-cell lymphoma The inactivation of the PRDM1 sequence at the TAD boundary in B cell chromatin leads to malignant proliferation of B cells
Mantle cell lymphoma (MCL) The chromosomal interactions in the oncogenic region of SOX11 have significantly increased
Chronic lymphocytic leukemia The 3D interactions and active enhancers in the EBF1 genomic region within B cells are lost in the early stage of the disease