Table 1.
Novel FZD4 Mutations Found in This Study
| No | Nucleotide Change | Protein Change | 1000G | ExAC | PolyPhen-2 | PhyloP100 | CADD | REVEL | Heredity | Cosegregation | ACMG |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | c.272C>T | p.S91F | 0 | 0 | 0.982 | 1.506 | 29.8 | 0.698 | Father | Yes | PS3 |
| 2 | c.308T>A | p.V103E | 0 | 0 | 0.999 | 4.471 | 28.7 | 0.667 | Mother | Yes | PS3 |
| 3 | c.433T>A | p.C145S | 0 | 0 | 1.000 | 9.231 | 28.7 | 0.955 | Father | Yes | PS3 |
| 4 | c.478G>A | p.E160K | 0 | 0 | 0.701 | 7.816 | 25.7 | 0.575 | Father | Yes | PS3 |
| 5 | c.1130G>T | p.C377F | 0 | 0 | 1.000 | 7.767 | 29.8 | 0.925 | Mother | Yes | PS3 |
In silico analyses used: PolyPhen-2 (http://genetics.bwh.harvard.edu/pph2/; provided in the public domain by Harvard University, Cambridge, MA, USA), PHRED- like Scaled CADD Score (https://cadd.gs.washington.edu/snv) and REVEL (https://sites.google.com/site/revelgenomics/). Refer to this literature for ACMG variant classification.46