Table 2.

Common differently expressed genes in each comparison. The common top ten most upregulated and downregulated genes were identified from three cohort profile data sets in each comparison. The logFC was retrieved from GSE21369 or GSE150910*, depending on the case.

Common DEGs in HP vs. Ctrl	logFC	Common DEGs in HP vs. IPF	logFC	Common DEGs in IPF vs. CTRL	logFC
CARMN	3.93	CLDN18*	3.32	FNDC1	2.89
DIO2	3.77	EEF2*	3.25	COL3A1	2.73
FNDC1	3.58	CXCL9*	2.6	CARMN	2.44
FAM83D	3.36	PLA2G2D*	2.42	DIO2	2.42
COL15A1	3.3	ZNF683*	2.147	VSIG1	2.3
COL3A1	3.22	LMOD1*	2.09	FLNC	2.28
DES	3.08	SPRR1A	2.07	DDX17	1.9
FBX032	2.59	SORBS1	2	THY1	1.89
LMOD1	2.56	COL4A6	1.9	COL1A2	1.87
FLNC	2.28	AGER*	1.8	PWWP3A	1.87
RGCC	−1.78	CLMP*	−1.08	SLC19A3	−1.79
KLF6	−1.83	CCL24*	−1.09	MME	−1.84
RAB11FIP1	−1.94	SEMA3C*	−1.17	AGTR2	−1.94
PAPSS2	−1.96	BHMT2*	−1.175	GADD45B	−2.04
SLC19A3	−2.01	F11R*	−1.24	HHIP	−2.04
EPB41L5	−2.48	JAG1*	−1.25	PIGA	−2.08
MYRF	−2.66	MAP1B*	−1.34	GPM6A	−2.11
SLC39A8	−2.71	IRF4*	−1.599	KLF4	−2.24
FAM167A	−2.93	CLIC5	−1.65	NAMPT	−2.29
CA4	−4.4	LAMP3*	−2.03	IL1RL1	−3.86