Table 1.
SNP ID | Chromosome | Position (bp) | p-value | Phenotype variance explained (%) | GWAS model |
---|---|---|---|---|---|
Downy mildew | |||||
mu_s_G_A_chr15_11771804 | 15 | 11,771,804 | 1.84e-08 | 80.6 | BLINK |
9.92e-07 | 43.5 | GLM | |||
3.78e-06 | 43.5 | MLM | |||
chr16_8343864_A_G | 16 | 8,343,864 | 4.56e-07 | 65.6 | FarmCPU |
1.59e-06 | 18.5 | GLM | |||
4.19e-06 | 18.5 | MLM | |||
Powdery mildew | |||||
chr6_18189932_G_T | 6 | 18,189,932 | 6.73e-08 | 11.4 | BLINK |
3.94e-07 | 7.75 | GLM | |||
2.00e-06 | 11.4 | MLM | |||
be_C_T_chr17_16451257 | 17 | 16,451,257 | 1.63e-07 | 14.0 | BLINK |
2.02e-07 | 7.72 | GLM | |||
4.88e-07 | 14.1 | MLM |
Per each SNP, chromosome, position (PN40024 v4 genome), p-value, phenotype variance explained and GWAS models are reported.