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. 2024 Mar 22;15:1386225. doi: 10.3389/fpls.2024.1386225

Table 1.

List of significant SNP loci associated with downy and powdery mildew resistance.

SNP ID Chromosome Position (bp) p-value Phenotype variance explained (%) GWAS model
Downy mildew
mu_s_G_A_chr15_11771804 15 11,771,804 1.84e-08 80.6 BLINK
9.92e-07 43.5 GLM
3.78e-06 43.5 MLM
chr16_8343864_A_G 16 8,343,864 4.56e-07 65.6 FarmCPU
1.59e-06 18.5 GLM
4.19e-06 18.5 MLM
Powdery mildew
chr6_18189932_G_T 6 18,189,932 6.73e-08 11.4 BLINK
3.94e-07 7.75 GLM
2.00e-06 11.4 MLM
be_C_T_chr17_16451257 17 16,451,257 1.63e-07 14.0 BLINK
2.02e-07 7.72 GLM
4.88e-07 14.1 MLM

Per each SNP, chromosome, position (PN40024 v4 genome), p-value, phenotype variance explained and GWAS models are reported.