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. 2024 Feb 2;4(1):ycae020. doi: 10.1093/ismeco/ycae020

Figure 1.

Figure 1

Methods overview diagram. A) generation of reference alignment B) phylogenetic reconstruction C) evaluation of phylogenetic congruence between Nir and organism phylogenies D) screening metagenomes for nir gene fragments. HMM logo in panel b was generated in Skylign (http://skylign.org/).