. Author manuscript; available in PMC: 2024 Apr 9.

Published in final edited form as: J Chem Inf Model. 2023 Sep 22;64(7):2405–2420. doi: 10.1021/acs.jcim.3c01023

Table 9.

Comparison of PLPCA and Other Methods on Datasets Obtained from Gene Expression Omnibus

data set	method	mean ACC	mean macro-REC	mean macro-PRE	mean macro-F1	macro-AUC
GSE44076	PLPCA	0.8507	0.8555	0.8762	0.8459	0.8210
	pLPCA	0.6223	0.6340	0.5940	0.5312	0.6072
	RLSDSPCA¹³	0.6121	0.6236	0.5712	0.5198	0.5883
	SDSPCA^11,13	0.6161	0.6273	0.5767	0.5225	0.5989
	RgLPCA¹²	0.6150	0.6263	0.5867	0.5231	0.5834
	gLSPCA⁴¹	0.6216	0.6332	0.5936	0.5299	0.5977
	gLPCA¹²	0.6219	0.6334	0.5938	0.5301	0.6026
	PCA⁴²	0.6209	0.6324	0.5887	0.5286	0.5910
GSE21034	PLPCA	0.8214	0.7356	0.7044	0.6989	0.7283
	pLPCA	0.8185	0.7333	0.7022	0.6963	0.7230
	RLSDSPCA¹³	0.8190	0.7335	0.7026	0.6968	0.7236
	SDSPCA^11,13	0.8185	0.7333	0.7022	0.6963	0.7230
	RgLPCA¹²	0.8190	0.7335	0.7026	0.6968	0.7236
	gLSPCA⁴¹	0.5999	0.4577	0.4571	0.4367	0.4499
	gLPCA¹²	0.8185	0.7333	0.7022	0.6963	0.7230
	PCA⁴²	0.8185	0.7333	0.7022	0.6963	0.7230
GSE28735	PLPCA	0.6476	0.6558	0.6599	0.6416	0.6449
	pLPCA	0.5809	0.5905	0.5990	0.5669	0.6211
	RLSDSPCA¹³	0.5990	0.6105	0.6169	0.5871	0.6328
	SDSPCA^11,13	0.5914	0.6026	0.6111	0.5787	0.6309
	RgLPCA¹²	0.5866	0.5971	0.6035	0.5738	0.6287
	gLSPCA⁴¹	0.5666	0.5699	0.5736	0.5566	0.5777
	gLPCA¹²	0.5806	0.5907	0.5966	0.5684	0.6205
	PCA⁴²	0.5803	0.5905	0.5959	0.5678	0.6200