TABLE 2.

Differentially expressed transcripts in response to RusT pulse-expression (≥2-fold change)

Gene ID	Gene product	Fold change	FDR-adj. P value	gfp fusion (relative to TSS)	Downregulation in low iron conditionsa
CCNA_02895	TonB-dependent receptor	−4.2	4.1 E−13	−269 to +60	Yes
CCNA_03263	TonB-dependent receptor	−3.8	7.7 E−10	−116 to +60	Yes
CCNA_01042	TonB-dependent receptor	−3.5	9.5 E-10	−225 to +60	Yes
CCNA_02400	Transporter, major facilitator superfamily	−3.4	1.2 E−10	−32 to +60
CCNA_01475	OmpW family outer membrane protein	−3.3	1.9 E−05	−40 to +75	Yes
CCNA_01738	TonB-dependent outer membrane receptor	−2.8	1.2 E−07	−86 to +60
CCNA_00210	TonB-dependent receptor	−2.8	2.6 E−4	−59 to +60	Yes
CCNA_02380	Aspartate 1-decarboxylase	−2.8	4.6 E−05	−71 to +60
CCNA_03181	Alcohol dehydrogenase	−2.7	2.1 E−05	−156 to +60
CCNA_01043	Hypothetical protein	−2.6	3.6 E−05	−43 to +60
CCNA_03248	TonB-dependent receptor	−2.5	1.6 E−03	−49 to +60
CCNA_02741	Conserved hypothetical protein	−2.4	4.6 E−05	−99 to +75
CCNA_03774	Citrate lyase beta chain/citryl-CoA lyase subunit	−2.3	2.7 E−04	−29 to +60	Yes
CCNA_00338	TonB-dependent receptor	−2.2	9.2 E−04	−94 to +60
CCNA_02047	Glutamine synthetase GlnA	−2.2	0.05	−424 to +60; −42 to +60
CCNA_00573	TonB-dependent receptor	−2.1	6.4 E−04	No tss
CCNA_02342	Hypothetical protein with pentapeptide repeats	−2.1	6.4 E−04	−35 to +60
CCNA_03294	Beta-lactamase family protein	−2.0	3.3 E−03	−96 to +60
CCNA_02379	Hypothetical protein	−2.0	7.7 E−04	−71 to +60
CCNA_03360	Tagatose-1,6-bisphosphate aldolase	2.0	0.02	−282 to +60
CCNA_01820	GTP-binding protein	2.1	3.6 E−03	−179 to +60; −53 to +60
CCNA_R0093	Non-coding RNA CrfA	2.2	1.8 E−03
CCNA_R0199	Non-coding RNA RusT	72.4	5.6 E−50

^a As determined in reference (50).