Table 1.
Sequence featured of the synthetic locus
| Synthetic locus | ||||
|---|---|---|---|---|
| Feature | HPRT1 | HPRT1R | HPRT1RnoCpG | |
| Length | 100,667 | 100,667 | 95,067 | |
| GC content | 0.41 | 0.41 | 0.38 | |
| Dinucleotides | AA | 6,601 | 6,601 | 6,601 |
| AC | 4,942 | 6,952 | 5,803 | |
| AG | 7,012 | 5,734 | 6,883 | |
| AT | 7,491 | 6,759 | 6,759 | |
| CA | 6,952 | 4,942 | 5,743 | |
| CC | 4,261 | 4,261 | 3,442 | |
| CG | 1,202 | 4,499 | 0 | |
| CT | 7,038 | 5,751 | 6,583 | |
| GA | 5,734 | 7,012 | 6,211 | |
| GC | 4,499 | 1,202 | 726 | |
| GG | 4,348 | 4,348 | 4,455 | |
| GT | 5,368 | 7,388 | 6,556 | |
| TA | 6,759 | 7,491 | 7,491 | |
| TC | 5,751 | 7,038 | 5,797 | |
| TG | 7,388 | 5,368 | 6,609 | |
| TT | 7,415 | 7,415 | 7,415 | |
| CpG | Expected | 4,291 | 4,291 | 3,386 |
| Ratio | 0.28 | 1.05 | 0 | |
| Yeast TFBSsa | 5,159 | 18,191 | 13,284 | |
| Mouse TFBSsb | p-val < 0.001 | 24,578 | 19,782 | 21,897 |
| q-val < 0.01 | 1,132 | 707 | 882 | |