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. 2024 Mar 6;628(8007):373–380. doi: 10.1038/s41586-024-07128-2

Table 1.

Sequence featured of the synthetic locus

Synthetic locus
Feature HPRT1 HPRT1R HPRT1RnoCpG
Length 100,667 100,667 95,067
GC content 0.41 0.41 0.38
Dinucleotides AA 6,601 6,601 6,601
AC 4,942 6,952 5,803
AG 7,012 5,734 6,883
AT 7,491 6,759 6,759
CA 6,952 4,942 5,743
CC 4,261 4,261 3,442
CG 1,202 4,499 0
CT 7,038 5,751 6,583
GA 5,734 7,012 6,211
GC 4,499 1,202 726
GG 4,348 4,348 4,455
GT 5,368 7,388 6,556
TA 6,759 7,491 7,491
TC 5,751 7,038 5,797
TG 7,388 5,368 6,609
TT 7,415 7,415 7,415
CpG Expected 4,291 4,291 3,386
Ratio 0.28 1.05 0
Yeast TFBSsa 5,159 18,191 13,284
Mouse TFBSsb p-val < 0.001 24,578 19,782 21,897
q-val < 0.01 1,132 707 882

aYeast TFBSs as predicted using the YEASTRACT+ database65.

bMouse TFBSs as predicted using FIMO66 in the MEME suite with the JASPAR vertebrate motif database67.