Table 3. Average pairwise rms deviations, in Å, for JDV Tat—BIV TAR complex.
Backbone | Heavy | |
---|---|---|
Complex | ||
All residues | 1.59 ± 0.33 | 1.79 ± 0.37 |
Peptide residues 70-81; RNA nts 5-11, 13-16, and 21-30 | 1.22 ± 0.29 | 1.21 ± 0.21 |
Peptide | ||
All residues | 0.99 ± 0.11 | 1.44 ± 0.28 |
Residues 70-81 | 0.78 ± 0.17 | 1.12 ± 0.17 |
RNA | ||
Stems with U10 bulge (nt 5-11, 13-16, and 21-30) | 1.32 ± 0.24 | 1.24 ± 0.22 |
Stems, U10 and Loop (nt 5-11 and 13-30) | 1.51 ± 0.30 | 1.50 ± 0.29 |
nt, nucleotides.