Table 3.
Immunodominant capsid epitope sequence alignment. The newly characterized Greek sequences are aligned using reference strains belonging to different subtypes and countries. The subtype of each reference strain is indicated when available.
| Strain | Subtype | Sequence |
|---|---|---|
| VLVLV1A_k1514_Iceland | A1 | KLNEEAERWVRQNPPGP |
| AY101611_85-34_USA | A2 | ................. |
| AY530289_SRLV-S1_Greece | ................. | |
| G001_I | ................. | |
| G001_II | ................. | |
| G011 | ................. | |
| G018_I | ................. | |
| G022_I | ................. | |
| G026_II | ................. | |
| G026_III | ................. | |
| G045_I | ................. | |
| G045_II | ................. | |
| G046 | ................. | |
| G048_I | ................. | |
| G055 | ................. | |
| G058 | ................. | |
| G061_II | ................. | |
| G015 | ................. | |
| G019 | ................. | |
| G020 | ................. | |
| G023 | ................. | |
| G027 | ................. | |
| G037 | ................. | |
| G038 | ................. | |
| MN233104_IIW1_Germany | A16 | .........I....... |
| MG554409_It0009_2017_Italy | A20 | .........I....... |
| AY530290_SRLV-S2_Greece | A | .........I....... |
| AF479638_P1OLV_Portugal | A2 | ..............GPN |
| AY530292_SRLV-S4_Greece | A | R................ |
| G002 | R................ | |
| G021_I | R................ | |
| G026_I | R................ | |
| G044_I | R................ | |
| G062 | R................ | |
| G024 | R................ | |
| G049 | R................ | |
| AM084209_Finland | ...D............. | |
| G48_II | ...D............. | |
| G056 | ...D............. | |
| AY445885_G4668_Switzerland | A4 | ..............A.. |
| G047 | ..............Q.. | |
| AJ305039_V27_Brazil | A1 | ................Q |
| OR666874_RO46_Romania | A | ................Q |
| G014 | ................Q | |
| KC241933_CAN1_9CAEV_Canada | B4 | ................R |
| AF015181_CA680_France | B1 | ......D..R.N....G |
| M33677_CAEV_CORK_USA | B1 | .........R.N...P. |
| G044_II | .........R.N...P. | |
| G032 | .........R.N...P. | |
| G040 | .........R.N...P. | |
| LC002526_Philippine | B | ......D..R.N...P. |
| FJ195346_Ov496_Spain | B2 | .........R.N...PQ |
| G021_II | .........R.N...PQ | |
| G021_III | .........R.N...PQ | |
| G022_II | .........R.N...PQ | |
| G061_I | .........R.N...PQ | |
| G039 | .........R.N...PQ | |
| G053 | .........R.N...PQ | |
| G07 | .........R.N...PQ | |
| JF502416_Fonni_Italy | B3 | .........R.N...PA |
| JF502417_Volterra_Italy | B3 | .........R.N...PA |
| G018_II | .........KKN...PQ | |
| G04 | .......G.R.N...PQ | |
| AF322109_1GA_Norway | C | .........R....QPA |
| EU293537_Roccaverano_Italy | E1 | ...K...T.M....QP. |
| GQ381130_Seui_Italy | E2 | ...K...T.M....QP. |