TABLE 3.

Putative signature patterns for the V3, gag, LTR, and pol sequences associated with mortality, as detected with VESPA (27)

Signature	Position	Proportion of individuals
		Dead	Alive
V3
T	81	0.52	0.48
A	208	0.52	0.30
G	216	0.33	0.14
G	330	0.57	0.48
A	336	0.57	0.43
A	355	0.62	0.43
gag
G	114	0.56	0.45
A	117	0.52	0.35
A	143	0.48	0.44
T	190	0.64	0.49
A	444	0.44	0.41
LTR
T	34	0.56	0.44
T	71	0.52	0.24
pol
G	140	0.52	0.39
A	192	0.56	0.33