TABLE 1.
Sequence data and abbreviations of H3N2 isolates used in this study
Strain | Abbreviation | Sequence referencesa for:
|
|||||||
---|---|---|---|---|---|---|---|---|---|
Segment 1 PB2 gene | Segment 2 PB1 gene | Segment 3 PA gene | Segment 4 HA gene | Segment 5 NP gene | Segment 6 NA gene | Segment 7 M gene | Segment 8 NS gene | ||
A/Aichi/2/68 | Aic68 | M63515 | —b | M63515 | M34829 | ||||
A/NT/60/68 | NT68 | J02140 | J02138 | J02139 | J02136 | ||||
A/Beijing/1/68 | Bei68 | L07340 | |||||||
A/Hong Kong/8/68 | HK68 | U42630 | |||||||
A/Memphis/1/71 | Mem71 | L07341 | |||||||
A/Hong Kong/107/71 | HK71 | U42631 | |||||||
A/Udorn/307/72 | Udn72 | M91712 | D00051 | J02167 | J02169 | ||||
A/Dunedin/4/73 | Dun73 | M74899 | |||||||
A/PortChalmers/73 | PC73 | X08092 | |||||||
A/Beijing/39/75 | Bei75 | L07358 | |||||||
A/Victoria/3/75 | Vic75 | J02173 | |||||||
A/Alaska/6/77 | Ala77 | K01332 | |||||||
A/Texas/1/77 | Tex77 | D00602 | |||||||
A/Guangdong/38/77 | Gua77 | L07359 | |||||||
A/Bangkok/1/79 | Ban79 | K01150 | K01140 | ||||||
A/Memphis/5/80 | Mem80 | L07360 | |||||||
A/Shanghai/31/80 | Sha80 | L07361 | |||||||
A/HongKong/5/83 | HK83 | M22577 | |||||||
A/Yamagata/96/85 | Yam85 | NAc | |||||||
A/Houston/24269/85 | Hou85 | M17699 | |||||||
A/Mississippi/1/85 | Mis85 | U42632 | |||||||
A/Memphis/14/85 | Mem85 | L07364 | |||||||
A/Memphis/6/86 | Mem86 | L07365 | |||||||
A/Los Angeles/2/87 | Los87 | U62543 | |||||||
A/Guangdong/9/87 | Gua87 | L07366 | |||||||
A/Sichuan/2/87 | Sic87 | D21173 | D30671*a | ||||||
A/Shanghai/11/87 | Sha87 | U42633 | |||||||
A/Memphis/8/88 | Mem88 | M36040 | M259361 | L07370 | M63516 | ||||
A/England/427/88 | Eng88 | U42634 | |||||||
A/Guangdong/38/89 | Gua89 | L07373 | |||||||
A/Guangdong/39/89 | Gua89 | L18995 | |||||||
A/Guizhou/54/89 | Gui89 | D49963 | |||||||
A/Hokkaido/20/89 | Hok89 | D49960 | D30672* | ||||||
A/Beijing/352/89 | Bei89 | D49961 | L07353 | U42635 | D30670* | ||||
A/Shanghai/6/90 | Sha690 | L07357 | |||||||
A/Shanghai/24/90 | Sha2490 | U42636 | |||||||
A/Memphis/1/90 | Mem90 | L07355 | |||||||
A/Bangkok/144/90 | Ban90 | D49966 | |||||||
A/Shiga/2/91 | Shi91 | D49967 | |||||||
A/Brazil/2/91 | Bra91 | D30662 | |||||||
A/Washington/15/91 | Was91 | D30663 | U42637 | D30673* | |||||
A/Beijing/32/92 | Bei92 | Z46392 | U42770 | D30667* | |||||
A/Yokohama/83/92 | Yok92 | D30665 | |||||||
A/Tianjin/33/92 | Tia92 | D30664 | D30674* | ||||||
A/Sapporo/304/92 | Sap92 | U42776 | |||||||
A/Netherlands/938/92 | Net92 | U42775 | |||||||
A/Harbin/15/92 | Har92 | U42773 | |||||||
A/Nanchang/3332/93 | Nan93 | U42779 | |||||||
A/Washington/26/93 | Was93 | U43420 | |||||||
A/Louisiana/4/93 | Lou93 | U43417 | |||||||
A/Hebei/12/93 | Heb93 | D30668 | U65561* | ||||||
A/Shangdong/9/93 | Shd93 | Z46417 | U43419 | ||||||
A/Kitakyushu/159/93 | Kit93 | AF037412* | AF037418* | AF037424* | D30669 | AF038254* | AF038260* | U65562* | D30676* |
A/Guangdong/24/93 | Gua2493 | U42777 | |||||||
A/Guangdong/25/93 | Gua2593 | U42778 | |||||||
A/Bangkok/122/94 | Ban94 | U43426 | |||||||
A/Hebei/41/94 | Heb94 | U48441 | |||||||
A/Guangdong/28/94 | Gua94 | U48442 | |||||||
A/Sendai/c384/94 | Sen94 | U48440 | |||||||
A/Singapore/7/94 | Sin94 | U43422 | |||||||
A/NewYork/16/94 | NY94 | U43424 | |||||||
A/Vermont/3/94 | Ver94 | U43423 | |||||||
A/Akita/1/94 | Aki94 | U71132* | U71128* | U71136* | U48443 | U71144* | U71140* | U65564* | U65670* |
A/Johannesburg/33/94 | Joh94 | U43425 | |||||||
A/Tochigi/44/95 | Toc95 | AF037413* | AF037419* | AF037425* | U65554* | AF038255* | AF038261* | U65569* | AF038275* |
A/Aichi/69/94 | Aic95 | U48446 | |||||||
A/Shiga/20/95 | Shi95 | U71134* | U71130* | U71138* | U65557* | U71146* | U71142* | U65573* | U65673* |
A/Akita/1/95 | Aki95 | U71133* | U71129* | U71137* | U48444 | U71145* | U71141* | U65574* | U65671* |
A/Alaska/10/95 | Ala95 | U51245 | |||||||
A/Wuhan/359/95 | Wuh95 | AF038268* | U51246 | ||||||
A/Miyagi/29/95 | Miy95 | U71135* | U71131* | U71139* | U65560* | U71147* | U71143* | U65577* | U65674* |
A/Fukushima/114/96 | Fuk96 | AF037414* | AF037421* | AF037427* | AF038266* | AF038257* | AF038265* | AF038272* | AF038277* |
A/Niigata/137/96 | Nii96 | AF037415* | AF037420* | AF037426* | AF038267* | AF038256* | AF038262* | AF038271* | AF038276* |
A/Fukushima/140/96 | Fuk97 | AF037416* | AF037422* | AF037428* | AF038269* | AF038258* | AF038263* | AF038273* | AF038278* |
A/Shiga/25/97 | Shi97 | AF037417* | AF037423* | AF037429* | AF038270* | AF038259* | AF038264* | AF038274* | AF038279* |
∗, Sequenced in this report.
—, Sequence not available.
NA, accession number not available (Nakajima et al. [35]).