Reorientation of equivalent
atoms (above) and determining the new
position of the transferred H (below). (a) Exchanging the positions
of the equivalent Os of OAc–. Dummy Hs are marked
with a green circle. As the O without the dummy H(O1) is closer to
the donated proton than O2, their positions are swapped. After the
transfer, the position of the H of HOAc is also updated. The unnaturally
long O–H bond in the middle step does not lead to problems,
as there are no simulation steps during the reorientation. (b) The
exact mechanism of setting the new position of the transferred H.
The molecules before the transfer are shown on the left. The new position
(marked with an x) is calculated to lie on the acceptor
atom—donated H line, 1 Å from the acceptor. The right
side shows the molecules after the transfer, with the H at its new
position. Dummy atoms are shown in green.