Table 1. Target genes, oligonucleotide primer sequences, amplicons, and cycling conditions used for PCR.
Target gene | Specificity | Primer sequence (5’–3’) | Amplified product size (bp) | PCR cycling condition | Reference |
---|---|---|---|---|---|
16S rRNA | Housekeeping gene | F: ACTGGGACTGAGACACGG R: GATAACGCTTGCCACCTA |
242 | First, denaturation for 5 minutes at 94°C was followed by 35 cycles of 30 seconds at 94°C, 1 minute at 52°C, and 30 seconds at 55°C. Finally, elongation took place for 7 minutes at 72°C. | Huang et al., 2021 |
plcR | Pleiotropic regulator | F: ACCCGACATTAAAATCGTTTG R: TAGTATGCCTTGCGCAGTTG |
200 | First, denaturation for 2 minutes at 94°C was followed by 30 cycles of 30 seconds at 94°C, 1 minute at 52°C, and 30 seconds at 72°C. Finally, elongation took place for 10 minutes at 72°C. | Oltuszak-Walczak, et al., 2013 |
tasA | Amyloid like fiber | F: AGCAGCTTTAGTTGG TGG AG R: GTA ACT TAT CGC CTT GGA ATTG |
488 | First, denaturation for 5 minutes at 94°C was followed by 40 cycles of 30 seconds at 94°C, 45 seconds at 59°C, and 45 seconds at 72°C. Finally, elongation took place for 5 minutes at 72°C. | Caro-Astorga et al., 2015 |
sipW | Signal peptidase | F: AGA TAA TTA GCA ACG CGA TCTC R: AGA AAT AGC GGA ATA ACC AAGC |
488 | First, denaturation for 5 minutes at 94°C was followed by 40 cycles of 30 seconds at 94°C, 45 seconds at 54°C, and 45 seconds at 72°C. Finally, elongation took place for 5 minutes at 72°C. |