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. 2024 Jan 31;14(1):186–199. doi: 10.5455/OVJ.2024.v14.i1.17

Table 1. Target genes, oligonucleotide primer sequences, amplicons, and cycling conditions used for PCR.

Target gene Specificity Primer sequence (5’–3’) Amplified product size (bp) PCR cycling condition Reference
16S rRNA Housekeeping gene F: ACTGGGACTGAGACACGG
R: GATAACGCTTGCCACCTA
242 First, denaturation for 5 minutes at 94°C was followed by 35 cycles of 30 seconds at 94°C, 1 minute at 52°C, and 30 seconds at 55°C. Finally, elongation took place for 7 minutes at 72°C. Huang et al., 2021
plcR Pleiotropic regulator F: ACCCGACATTAAAATCGTTTG
R: TAGTATGCCTTGCGCAGTTG
200 First, denaturation for 2 minutes at 94°C was followed by 30 cycles of 30 seconds at 94°C, 1 minute at 52°C, and 30 seconds at 72°C. Finally, elongation took place for 10 minutes at 72°C. Oltuszak-Walczak, et al., 2013
tasA Amyloid like fiber F: AGCAGCTTTAGTTGG TGG AG
R: GTA ACT TAT CGC CTT GGA ATTG
488 First, denaturation for 5 minutes at 94°C was followed by 40 cycles of 30 seconds at 94°C, 45 seconds at 59°C, and 45 seconds at 72°C. Finally, elongation took place for 5 minutes at 72°C. Caro-Astorga et al., 2015
sipW Signal peptidase F: AGA TAA TTA GCA ACG CGA TCTC
R: AGA AAT AGC GGA ATA ACC AAGC
488 First, denaturation for 5 minutes at 94°C was followed by 40 cycles of 30 seconds at 94°C, 45 seconds at 54°C, and 45 seconds at 72°C. Finally, elongation took place for 5 minutes at 72°C.