Deposited data |
|
Simulated data |
Zhang et al.13
|
Harvard Dataverse: https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/COXHAP
|
EUR GWAS summary data for BMI, HDL, and LDL based on UKBB samples (GWAS round 2 from the Neale Lab) |
Locke et al.37; Willer et al.37,38
|
http://www.nealelab.is/uk-biobank |
Split GWAS summary data based on 80% individuals from PAGE for BMI, HDL, and LDL stratified for AFR and AMR |
Wojcik et al.3
|
Zenodo: https://doi.org/10.5281/zenodo.10800703
|
EAS GWAS summary data from BBJ for BMI, HDL, and LDL |
Kanai et al.39,40
|
http://jenger.riken.jp/en/result |
GWAS summary data from GLGC for HDL, LDL, TC, and logTG stratified for EUR, AFR, AMR, EAS, and SAS |
Graham et al.25
|
https://csg.sph.umich.edu/willer/public/glgc-lipids2021/results/ancestry_specific/ |
GWAS summary data from All of Us for BMI and height stratified for EUR, AFR, and AMR |
This paper |
Harvard Dataverse: https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/FAWEQK
|
LD information used in MUSSEL for EUR, AFR, AMR, EAS, and SAS |
This paper |
Zenodo: https://doi.org/10.5281/zenodo.10816301
|
1000 Genome Phase 3 |
Siva24
|
https://mathgen.stats.ox.ac.uk/impute/1000GP_Phase3.html |
|
Software and algorithms |
|
PLINK 1.9 |
Chang et al.41
|
https://www.cog-genomics.org/plink |
PLINK 2.0 |
Purcelland Chang42
|
https://www.cog-genomics.org/plink/2.0/ |
LDpred2 |
Privé et al.14
|
https://privefl.github.io/bigsnpr/articles/LDpred2.html |
PRS-CSx |
Ruan et al.9
|
https://github.com/getian107/PRScsx |
CT-SLEB |
Zhang et al.13
|
https://github.com/andrewhaoyu/CTSLEB |
LDSC |
Bulik-Sullivan et al.43
|
https://github.com/bulik/ldsc |
MUSSEL |
This paper |
Zenodo: https://doi.org/10.5281/zenodo.10800738
|