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. 2024 Apr 16;19(4):e0296127. doi: 10.1371/journal.pone.0296127

Table 1. Proteins with a similar fold to BBK01, as identified by DALI analysis.

No. Protein Organism PDB ID Z score RMSD (Å) Identity (%) N residues
1. Structural maintenance of chromosomes protein 2 (SMC) Saccharomyces cerevisiae 4rsi-A 9.2 3.49 13 191
2. Chromosome partition protein (SMC) (residues 463–719) Geobacillus stearothermophilus 10 5h69-A 9.2 2.29 4 81
3. Chromosome partition protein (SMC) Pyrococcus furiosus 4rsj-A 9.0 3.92 8 106
4. DNA double-strand break repair Rad50 ATPase (SMC) Pyrococcus furiosus 1l8d-A 10.4 2.94 12 90
5. Invasin IpaB Shigella flexneri 5wkq-A 10.3 1.61 10 77
6. Cytoplasmic dynein 1 heavy chain 1 (residues 3207–3483) Mus musculus 3wuq-A 10.3 2.53 10 91
7. Charged multivesicular body protein 4b (residues 23–97) Homo sapiens 4abm-A 10.2 1.85 10 76
8. Prefoldin subunit beta Pyrococcus horikoshii 2zdi-B 10.1 1.54 7 46
9. Prefoldin subunit beta Methanothermobacter thermautotrophicus 1fxk-B 9.8 1.93 8 47
10. Chromatin modification-related protein YNG2 Saccharomyces cerevisiae 5j9q-D 9.4 3.55 6 56
11. Lysine-specific histone demethylase 1A Homo sapiens 2x0l-A 10.7 3.98 9 118
12. Membrane fusion protein (MFP) family protein Serratia marcescens 5nen-A 10.8 3.77 5 112
13. Centrosomal protein of 57 kDa Homo sapiens 4l0r-A 10.7 1.54 7 37