TABLE 3.
Top GWS differential hydroxymethylated (5hmC) CpG sites.
| Gene | chr | BP | Strand | meth.diff | p value | q value |
|---|---|---|---|---|---|---|
| SLC12A8 | chr3 | 125141732 | + | 5.48 | 0.000104 | 0.049906 |
| TFAP2A | chr6 | 10419244 | + | −3.16 | 0.000104 | 0.049906 |
| TLX1 | chr10 | 101135137 | − | −4.18 | 0.000103 | 0.049903 |
| SOX17 | chr8 | 54453592 | + | −3.17 | 0.000103 | 0.049903 |
| MAFA | chr8 | 143431381 | + | 3.19 | 0.000103 | 0.049903 |
| ZIC2 | chr13 | 99989614 | − | 11.33 | 0.000102 | 0.049745 |
| RP11-570J4.2 | chr21 | 9592720 | − | 6.70 | 0.000102 | 0.04968 |
| ARL6IP4 | chr12 | 122981331 | − | −3.29 | 0.000101 | 0.049664 |
| PHOX2A | chr11 | 72244124 | + | −3.20 | 0.0001 | 0.049519 |
| NID2 | chr14 | 52068116 | + | −3.41 | 0.0001 | 0.049519 |