. 2024 Mar 6;206(4):e00371-23. doi: 10.1128/jb.00371-23

TABLE 2.

Functional categories of genes downregulated in expression in all variants compared to wild type

	Total # genes downregulated in variants	Hypothetical protein	Deubiquitinase	Amino acids and derivatives	Co-factors, vitamins, prosthetic groups	DNA processing	Energy and precursor metabolites	Fatty acids, lipids, and isoprenoids	Functional category
	Total # genes downregulated in variants	Hypothetical protein	Deubiquitinase	Amino acids and derivatives	Co-factors, vitamins, prosthetic groups	DNA processing	Energy and precursor metabolites	Fatty acids, lipids, and isoprenoids	Porphyrin metabolism	Protein fate	RNA processing	Stress response, defense, virulence	Transporter/binding proteins
20h PI	46	13	1	3	2	9	1	2	2	2^b	2	8^a	1
36h PI	5					1			1			3^a
48h PI	7					4			1			2^a

^{^a}

Including Inc proteins and phospholipase.

^{^b}

including tsp.