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. 2024 Apr 18;6(2):lqae036. doi: 10.1093/nargab/lqae036

Table 2.

Ribosome drop-off rates estimated by Ribofilio (bin-size = 50)

Dataset Drop-off rate per bin (rb) Drop-off rate per codon (rc) RMSE Inline graphic SE CI p-value
D1 0.0051 0.0003 0.0143 0.4907 0.0006 r b ± 0.0011 <0.00001
D2 0.0102 0.0006 0.025 0.6887 0.0007 r b ± 0.0013 <0.00001
D3 0.0100 0.0006 0.0762 0.4104 0.0011 r b ± 0.0021 <0.00001
D4 0.0073 0.0004 0.0282 0.4993 0.0003 r b ± 0.0006 <0.00001
D5 0.0057 0.0003 0.4843 0.0341 0.0021 r b ± 0.0041 0.0038
D6 0.0053 0.0003 0.3147 0.0462 0.0019 r b ± 0.0038 0.0029
D7 0.0079 0.0005 0.5336 0.0594 0.0027 r b ± 0.0053 0.0016
D8 0.0077 0.0005 0.4188 0.0709 0.0027 r b ± 0.0052 0.0020

Column 1: Dataset ID (Table 1); the datasets used as reference in the comparative analysis (S. cerevisiae cultured in standard conditions) are highlighted in bold. Column 2: Drop-off rate per bin (rb). Column 3: Drop-off rate per codon (rc). Column 4: RMSE. Column 5: coefficient of determination (R2). Column 6: Standard Error Estimate (SE).Column 7: Confidence Interval 95%. Column 8: P-value resulting from the t-test (null hypothesis: rb = 0) performed according to Equation (6).