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. 2024 Apr 18;18(1):76. doi: 10.1186/s13065-024-01178-3

Table 2.

Protein ligand interaction (PLI) detail of 06 top most compounds in complex with NLRP3 NACHT domain

Compound Docking score Docking interaction result
Ligand Receptor Interaction Distance E E(kcal/mol)
ZINC12359085 − 8.435 S1 8 OE1 GLU 629 H-donor 3.57 − 2.5
N2 10 CB PRO 352 H-acceptor 3.34 − 0.6
03 13 NH1 ARG 578 H-acceptor 2.78 − 3.2
03 13 NH2 ARG 578 H-acceptor 2.97 − 2.0
6-ring CD1 ILE 411 Pi-E 3.61 − 0.6
ZINC72288245 − 9.897 C10 17 SD Met 661 H-donor 4.09 − 0.6
O1 3 NH2 ARG 578 H-acceptor 3.52 − 1.3
03 15 OG1 THR 439 H-acceptor 2.78 − 2.2
04 16 OG1 THR 439 H-acceptor 2.79 − 0.8
04 16 NH1 ARG 578 H-acceptor 3.36 − 1.8
BA-II-51 − 12.654 S 12 CA ALA 227 H-acceptor 3.92 − 0.5
S 12 N ALA 228 H-acceptor 4.31 − 1.8
N 9 6-ring THR 662 H-pi 4.30 − 0.9
N 13 6-ring THR 662 H-pi 4.45 − 0.9
BA-II-45 − 10.987 C 15 OE1 GLU 629 H-donor 3.36 − 0.5
0 11 NH1 ARG 578 H-acceptor 2.67 − 0.7
S 12 CA ALA 227 H-acceptor 3.77 − 0.5
S 12 N ALA 228 H-acceptor 3.43 − 2.5
N 9 6-ring THR 662 H-pi 4.33 − 1.0
N 13 6-ring THR 662 H-pi 4.27 − 0.9
5,280,448 − 7.987 0 4 CA ALA 227 H-acceptor 2.90 − 0.5
0 1 NH2 ARG 578 H-acceptor 2.97 − 0.9
6-ring N MET 408 H-donor 3.70 − 0.9
115,089 − 9.478 CO 1 OE1 GLU 629 H-donor 3.03 − 1.7
0 4 0 ALA 227 H-donor 2.90 − 0.5
0 1 NH2 ARG 578 H-acceptor 2.97 − 0.9
6-ring CG PRO 352 Pi-H 3.70 − 0.9
Tranilast (Reference compound) − 8.456 0 15 OE1 GLU 369 H-donor 2.84 − 2.2
0 11 N ALA 227 H-acceptor 3.21 − 0.8
6-ring NH1 ARG 578 Pi-cation 3.71 − 0.5