TABLE 1.
Primer | Sequence (5′-3′)a | Restriction site | Positionb | Gene |
---|---|---|---|---|
2190 | AGCACTGCAAGCTTGAACTA | HindIII | −7 | TGEV M |
2282 | GTTGGCGAATTCGAAGTTTAGTTATACCATATG | EcoRI | 778 | TGEV M |
3247 | CTAAACACCATGGCGATTTTGTTAATATTAGCGTGTG | NcoI | 28 | TGEV M |
2414 | GAAGAAGGGATCCATAACTATGGCGTTTCC | BamHI | 11 | TGEV E |
2030 | TTGTCTAGATCAAGCAAGGAGTG | XbaI | 235 | TGEV E |
66830 | CCGATTCCATGGCTAGTGTAACTACACCAGCACCA | NcoI | 27 | BCV M |
66841 | AGGGATCCTTAAAGTTTAGATATTATTTCTC | BamHI | 678 | BVC M |
627 | ATGTTTATGGCTGATGC | 17 | BCV E | |
519 | GTAAACTGGTGCTGGTGTAGTTAC | 262 | BCV E | |
2373 | ATAGACCAGCTGAAGTTCCATTCCTTTAGGAA | 61 | BCV M | |
72916 | GGAACTTCAGCTGGTCTATAA | 181 | TGEV M | |
85138 | TCCAGTTCGCGAGATGCCAAATAAGATCGCC | 133 | TGEV M | |
85139 | TTGGCATCTCGCGAACTGGAACTTTTCTTTGGGTATTATAC | 97 | BCV M | |
2119 | TAATACGACTCACTATAGG | T7 promoter | ||
85137 | AGTTGAATGCATAATTTAAAAGTTGCCAAAAATGCC | NsiI | 98 | BCV E |
85136 | TTAAATTATGCATTCAACTTTGCGGTATGTG | NsiI | 145 | BCV E |
Overlapping regions for primer pairs 2373-72916 and 85138-85139 are in boldface; restriction sites are underlined.
Position of the last nucleotide of the primer relative to that of the first coding nucleotide.