TABLE 3.
Sample | Nucleotide sequence at crucial codons of the gB genea
|
No. (%) showing sequenceb | RFLP pattern | ||||
---|---|---|---|---|---|---|---|
119 | 137 | 185 | 220 | 406 | |||
Prototype | |||||||
IM | GTG | TCA | TTT | GGG | ATT | NA | I |
7660 | GTA | TCG | TTC | GGC | ATC | NA | II |
gB allele | |||||||
A | GTG | TCG | TTC | GGG | ATT | 1 (2) | I |
B | GTG | TCG | TTT | GGG | ATT | 3 (6) | I |
C | GTG | TCG | TTC | GGG | ATC | 20 (41) | I |
D | GTA | TCG | TTC | GGC | ATC | 5 (10) | II |
E | GTA | TCA | TTT | GGG | ATT | 1 (2) | III |
F | GTG | TCA | TTT | GGG | ATT | 19 (39) | I |
Based on the codon numbers of the published JI sequence (23); the codon sequences of sample 7660 are indicated in bold.
Number of samples out of the 49 tested exhibiting the indicated genetic profile. NA, not applicable.