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. 2007 Nov 15;57(6):833–847. doi: 10.1007/s00262-007-0419-8

Table 3.

Prediction of HLA-DR4 binding peptides derived from h5T4 using different algorithms

Peptide code Position Sequence Purity (%) Score (R) Score (L) Score (S) (%) Score (Re) 32mer (PP)
P1 106–120 AGAFEHLPSLRQLDL 98 28 50 34 NB G (PP2)
P2 190–204 SNHFLYLPRDVLAQL 95 28 50 23 NB L (PP3)
P3 222–236 YVSFRNLTHLESLHL 95 28 50 51 38.7% N, O (PP4)

Maximum score for HLA-DR4 (R) is 28. Maximum score for HLA-DR4 (L) is 50. P1, P2 and P3 15-mer sequences are located within the sequence of G (PP2), L (PP3) and N or O (PP4) 35-mer peptides, respectively

R Rammensee [33], L Leiden [34], S Singh [56], Re Reche [57], NB non-binder