Table 1.
Peptide | Sequence | Distance (Å) (P2–P9)a | Orientation of side chain (P9)b |
---|---|---|---|
TRP-2 2L | SLYDFFVWL | 19.15 | ↓ |
TRP-2 2M | SMYDFFVWL | 19.20 | ↓ |
TRP-2 1Y2L | YLYDFFVWL | 19.53 | ↓ |
TRP-2 1Y2M | YMYDFFVWL | 19.53 | ↓ |
aThe distance between P2 and P9 and the orientation of the side chain at P9 was determined by the Simulation Method as described in Fig. 1
bArrows indicate the orientation of P9 residues with the respect to the floor of the binding groove of HLA-A*0201