Table 1:
Characteristics of the proteins in Figure 3.
| * C for Circadian, R for Rhythmic | 1-harmonic model | 2-harmonic model | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq-id | Name | Gene | UniProt | Class* | p-rhy | p-com | A | φ | p-rhy | p-com | A1 | A2 | φ1 | φ2 |
| 23326–10 | Glutathione S-transferase A2 | GSTA2 | P09210 | C | 3.76E-05 | 1.22E-01 | 0.223 | 7.7 | 2.24E-08 | 3.20E-04 | 0.230 | 0.070 | 7.5 | 18.7 |
| 9204–33 | Pro-opiomelanocortin | POMC | P01189 | C | 9.12E-42 | 2.06E-01 | 0.175 | 11.3 | 5.44E-44 | 2.19E-01 | 0.176 | 0.060 | 11.2 | 16.2 |
| 7921–65 | Four-jointed box protein 1 | FJX1 | Q86VR8 | C | 6.24E-47 | 4.51E-01 | 0.164 | 3.5 | 8.28E-49 | 3.27E-01 | 0.166 | 0.047 | 3.5 | 12.0 |
| 3509–1 | C-C motif chemokine 15 | CCL15 | Q16663 | C | 2.20E-17 | 5.84E-01 | 0.132 | 5.0 | 1.79E-15 | 5.85E-01 | 0.133 | 0.020 | 5.0 | 15.9 |
| 8620–56 | Kallikrein-14 | KLK14 | Q9P0G3 | C | 5.75E-09 | 5.54E-02 | 0.100 | 7.6 | 2.84E-09 | 1.09E-02 | 0.100 | 0.023 | 7.7 | 15.1 |
| 5954–62 | Parathyroid hormone | PTH | P01270 | C | 5.75E-05 | 1.13E-01 | 0.075 | 2.1 | 2.44E-06 | 4.16E-02 | 0.078 | 0.045 | 2.0 | 10.0 |
| 24490–16 | THAP domain containing protein 4 | THAP4 | Q8WY91 | C | 7.34E-08 | 1.97E-02 | 0.096 | 8.8 | 2.39E-06 | 5.48E-02 | 0.098 | 0.022 | 8.9 | 19.2 |
| 2212–69 | Tissue-type plasminogen activator | PLAT | P00750 | C | 4.63E-11 | 1.88E-01 | 0.165 | 10.7 | 6.65E-11 | 2.63E-02 | 0.160 | 0.005 | 10.7 | 13.8 |
| 10574–10 | Beta-2-microglobulin | B2M | P61769 | C | 5.96E-05 | 7.92E-01 | 0.088 | 7.0 | 5.25E-04 | 7.50E-01 | 0.089 | 0.023 | 6.9 | 13.2 |
| 24957–6 | Espin | None | B1AK53 | C | 4.39E-08 | 2.47E-01 | 0.086 | 6.5 | 9.92E-09 | 1.28E-01 | 0.086 | 0.033 | 6.3 | 11.8 |
| 18289–16 | C-C motif chemokine 15 | CCL15 | Q16663 | C | 3.38E-21 | 2.88E-01 | 0.101 | 5.2 | 7.58E-19 | 2.03E-01 | 0.101 | 0.007 | 5.3 | 16.8 |
| 25048–30 | Protein kinase C and casein kinase substrate in neurons protein 2 | PACSIN2 | Q9UNF0 | C | 1.45E-04 | 1.29E-01 | 0.194 | 21.1 | 4.05E-05 | 2.83E-02 | 0.197 | 0.075 | 21.2 | 4.8 |
| 21495–134 | Prosaposin receptor GPR37 | GPR37 | O15354 | C | 1.51E-15 | 6.85E-02 | 0.086 | 4.8 | 7.46E-16 | 6.52E-03 | 0.087 | 0.014 | 4.7 | 13.8 |
| 9264–11 | Cathepsin O | CTSO | P43234 | C | 9.87E-10 | 6.31E-02 | 0.075 | 13.9 | 5.13E-08 | 8.64E-02 | 0.078 | 0.003 | 13.9 | 0.6 |
| 15686–49 | Inhibin beta C chain | INHBC | P55103 | C | 5.70E-10 | 4.21E-01 | 0.087 | 18.5 | 8.82E-09 | 2.35E-01 | 0.087 | 0.011 | 18.4 | 8.8 |
| 15375–49 | Carboxypeptidase B | CPB1 | P15086 | C | 3.80E-05 | 1.13E-01 | 0.073 | 21.8 | 2.15E-04 | 1.20E-01 | 0.079 | 0.022 | 21.7 | 4.8 |
| 5668–49 | Anterior gradient protein 3 | AGR3 | Q8TD06 | R | 4.22E-02 | 1.45E-01 | 0.032 | 23.4 | 1.34E-05 | 6.52E-03 | 0.035 | 0.044 | 23.3 | 10.1 |
| 17342–13 | Anterior gradient protein 3 | AGR3 | Q8TD06 | R | 2.97E-02 | 2.38E-01 | 0.086 | 23.5 | 1.08E-05 | 9.84E-03 | 0.090 | 0.098 | 23.5 | 11.3 |
| 13118–5 | SPARC-related modular calcium-binding protein 1 | SMOC1 | Q9H4F8 | R | 2.43E-14 | 4.27E-12 | 0.026 | 19.9 | 1.82E-17 | 1.92E-12 | 0.026 | 0.031 | 19.9 | 10.2 |
| 9384–17 | Cathelicidin antimicrobial peptide | CAMP | P49913 | C | 4.90E-01 | 3.45E-01 | 0.008 | 14.9 | 4.57E-04 | 1.46E-01 | 0.010 | 0.032 | 14.3 | 21.9 |
Notes: The provided values for amplitudes and acrophases represent the average results across the four conditions employed in the analysis. Seq-Id is a unique id used by SomaLogic to measure proteins. UniProt provides a unique reference to a protein in UniProt database. In column class, “C” stands for Circadian while “R” stands for for Rhythmic. P-rhy is the adjusted p-value that tests if there is a rhythm. P-com is the adjusted p-value that tests if rhythms are different. The first block of proteins corresponds to the proteins in Figure 3 B while the last block corresponds to Figure 3 A. The middle block provides additional circadian proteins.