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. 2024 Mar 29;27(5):109650. doi: 10.1016/j.isci.2024.109650
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Rabbit polyclonal antiserum specific for V. cholerae Hcp Ishikawa et al.37 RRID: AB_2313773
Anti-rabbit horseradish peroxidase - conjugate Jackson Immuno Research, Newmarket, UK RRID: AB_2313773

Bacterial and virus strains

A. aphrophilus strains HK83 Culture Collection University of Gothenburg (CCUG) CCUG 49494
A. aphrophilus strains CCUG 11575 CCUG CCUG 11575
A. aphrophilus strains NJ8700 CCUG NJ8700
A. aphrophilus strains Aap-4K Isolated from a patient29,46 Aap-4K
A. aphrophilus strains Aap-12K Isolated from a patient29,46 Aap-12K
A. aphrophilus strains Aap-13K Isolated from a patient29,46 Aap-13K
A. aphrophilus strains Aap-21K Isolated from a patient29,46 Aap-21K
A. aphrophilus strains Aap-29K Isolated from a patient29,46 Aap-29K
A. aphrophilus strains Aap-30K Isolated from a patient29,46 Aap-30K
A. aphrophilus strains Aap-32K Isolated from a patient29,46 Aap-32K
A. aphrophilus strains Aap-53K Isolated from a patient29,46 Aap-53K
A. aphrophilus strains AHI-3151 Isolated from a patient47,48 AHI-3151
A. aphrophilus strains IH-90256 Isolated from a patient47,48 IH-90256
A. aphrophilus strains IH-90274 Isolated from a patient47,48 IH-90274
A. actinomycetemcomitans strain D7SS Isolated from a patient49 D7SS
A. actinomycetemcomitans strain JP2 Collection from division of Clinical Oral Microbiology and Immunology, university of Zurich (OMZ) OMZ 295
Actinomyces oris OMZ OMZ 745
Candida albicans OMZ OMZ 110
Fusobacterium nucleatum subsp. nucleatum KP-F2 OMZ OMZ 598
Streptococcus oralis SK248 OMZ OMZ 607
Streptococcus mutans UA159 OMZ OMZ 918
V. dispar ATCC 17748T OMZ OMZ 493

Chemicals, peptides, and recombinant proteins

Clarity™ Western ECL Substrate Bio-Rad Cat#1705062

Deposited data

Proteomic raw files ProteomeXchange PXD042723

Experimental models: Organisms/strains

Drosophila melanogaster Kyorin-Fly, Kyorin University, Tokyo, Japan Line Oregon R

Oligonucleotides

The A. actinomycetemcomitans-specific primers 5’-GAACCTTACCTACTCTTGACATCCGAA-3(forward) and 5’-TGCAGCACCTGTCTCAAAGC-3’ (reverse) Choi et al.50 N/A
Cyanine 3 -labelled A. actinomycetemcomitans 16S rRNA oligonucleotide probe Act639 5’-CTCCAGACCCCCAGTATG-3’ Thurnheer and Belibasakis24 Act639
FAM-labelled A. aprophilus 16S rRNA oligonucleotide 5’-CTCTAGACCCCCAGTCTG-3’ This work Aaph639

Software and algorithms

Quantable packages https://github.com/protViz/quantable
Progenesis QI for proteomics https://www.nonlinear.com/progenesis/qi-for-proteomics/