TABLE 1.
Organization of detected RNAsa
| ORF | Position (nt)
|
Transcription start | ||||||
|---|---|---|---|---|---|---|---|---|
| Leader sequence:
|
Transcription signals
|
|||||||
| 1 | 2 | 3 | 4 | ATG | Stop (TAA, TGA, TAG) | Poly(A)+ (AATAAA, GATAAA) | ||
| ORF 1 | 518 | 789 | 794 | 1330 | 1943 | 791 | ||
| 596 | 793 | |||||||
| 52K | L1 | L2 | 12193 | 13329 | 13858 | 12183 | ||
| RNA13316 | L1 | L2 | 13316 | 15043 | 13858? | 13246 | ||
| Penton | L1 or Li | L2 | 15110 | 16657 | 17526 | 15099 | ||
| pVII | L1 | L2 | 16679 | 16897 | 17526? | 16556 | ||
| pX | L1 | L2 | 16929 | 17495 | 17526? | 16702 or 16952 | ||
| pVI | L1 | L2 | 17559 | 18230 | 21767? | 17545 | ||
| 21826? | ||||||||
| 21836? | ||||||||
| Hexon | L1 | L2 | 18289 | 21717 | 21767? | 18263 or 18284 | ||
| 21836? | ||||||||
| EP | L1 | L2 | 21134 | 21754 | 21767? | 21104 | ||
| 21826? | ||||||||
| 21836? | ||||||||
| 100K | L1 | L2 | 23680 | 26634 | 27920 | 23178 | ||
| pVIII | L1 | L2 | 27149 | 27866 | 27920 | 27137 | ||
| Fiber 1 | 28363 | 30495 | 31775 | 37389 | ||||
| Fiber 2 | L1 | L2 | 30536 | 31768 | 31775 | 30514 | ||
| ORF 8 | L1 | L2 | ? | 37391 | 38239 | 38250 | 37389 | |
| ORF 9 | L1 | L2 | ? | ? | ? | 41002 | 41017? | 40133 |
| 41544? | ||||||||
| ORF 11 | 41958 | 42365 | 43660 | |||||
| 43670? | ||||||||
| ORF 16 | 39705 | 39286 | ? | ? | ||||
| ORF 18 | 38432 | 36144 | 35536 | 33924 | 36201 | |||
| 36349 | ||||||||
| ORF 19 | 38432 | 35599 | 34238 | 33924 | 36201 | |||
| 36349 | ||||||||
| ORF 20 | 33707 | 32892 | ? | |||||
| ORF 21 | 33058 | 32735 | ? | |||||
| ORF 22 | 43330 | 33936 | 33204 | 32429 | 31811 | 31811 | 32473 | |
| 43059 | 33887 | 33070 | ||||||
| DBP | 39815 | 39291 | 24716 | 23455 | 23224 | 21899 | 21880 or 21820 | 23340 |
| 39853 | 39716 | 24780 | 23667 | |||||
| TP | 11996 | 10269 | ? | ? | ||||
| Pol | 9866 | 6501 | ? | ? | ||||
| IVa2 | 6685 | 5366 | ? | ? | ||||
| ORF 12 | 27068 | 24716 | 15081 | 5094 | 4462 | 3596 or 3550 | 5385 | |
| 27095 | 24780 | 15272 | ||||||
| ORF 13 | 15977 | 15081 | 4568 | 3549 | 3550 | 5385 | ||
| 16037 | 15272 | |||||||
| RNA6278 | 6278 | 17348 | 19151 | ? | ? | ? | ? | |
| 6288 | 17883 | 19671 | ||||||
| RNA12191 | 12191 | 15380 | ? | ? | ? | ? | ||
| 12752 | 15997 | |||||||
| RNA7810 | 7810 | 17022 | ? | ? | ? | ? | ||
| 8160 | 17541 | |||||||
| RNA18133 | 18133 | 22147 | ? | ? | ? | ? | ||
| 18392 | 22517 | |||||||
a
Nucleotide positions correspond to the CELO virus genome sequence under GenBank accession no. U46933. Nucleotide numbers represent a site location (transcription signals and transcription start positions) or a sequence between two nucleotides (leader sequence positions). L1, Li, and L2 are the sequences involved in the bipartite leader described in the text. Only detected ORFs are listed.