Table 4.
Scores between Minimap2, Mora, AugPatho2, Kraken2, and Clark when aligning long simulated reads to REF-1
| Algorithm | Strain | Species | Genus | ||||||
|---|---|---|---|---|---|---|---|---|---|
| F1 | Sensitivity | Precision | F1 | Sensitivity | Precision | F1 | Sensitivity | Precision | |
| Minimap2 | 77.94 | 76.49 | 79.44 | 92.56 | 90.83 | 94.34 | 96.50 | 94.70 | 98.36 |
| Mora | 78.45 | 76.98 | 79.97 | 93.08 | 91.34 | 94.88 | 96.64 | 94.84 | 98.51 |
| AugPatho2 | 78.95 | 78.87 | 79.02 | 94.26 | 94.17 | 94.35 | 97.68 | 97.01 | 97.78 |
| Kraken2 | NA | NA | NA | 84.15 | 78.17 | 91.13 | 89.01 | 82.68 | 96.30 |
| Clark | 45.62 | 41.55 | 50.58 | 86.13 | 78.44 | 95.49 | 88.19 | 80.32 | 97.78 |
Both Mora and AugPatho2 increase the scores of Minimap2, but their scores are very similar