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. 2024 Apr 23;17:29. doi: 10.1186/s12284-024-00703-1

Table 5.

The individual ID, name, Original providing country, region and subpopulation group according to (McCouch et al. 2016)

GSOR ID† NSFTV ID†† Name Original providing country Region #Subpopulation group (fastStructure) (McCouch et al. 2016)
301,001 NSFTV_1 Agostano Italy West Europe TEJ
301,012 NSFTV_13 NSF-TV 13 Unknown Unknown AUS
301,383 NSFTV_15 Beonjo Republic of Korea East Asia TEJ
301,028 NSFTV_30 Chiem Chanh Vietnam Southeast Asia IND
301,033 NSFTV_35 CO18 India South Asia IND
301,057 NSFTV_61 Guan-Yin-Tsan China East Asia IND
301,058 NSFTV_65 Honduras Honduras Central America TRJ
301,061 NSFTV_68 I-Geo-Tze Taiwan East Asia ADMIX
301,072 NSFTV_79 Jouiku 393G Japan East Asia TEJ
301,079 NSFTV_87 Keriting Tingii Indonesia Southeast Asia ADMIX
301,084 NSFTV_92 Kinastano Philippines Southeast Asia TRJ
301,094 NSFTV_102 Leung Pratew Thailand Southeast Asia IND
301,125 NSFTV_134 Romeo Italy West Europe TEJ
301,137 NSFTV_146 Shuang-Chiang Taiwan East Asia IND
301,139 NSFTV_148 Sintane Diofor Burkina Faso Africa IND
301,154 NSFTV_163 Taducan Philippines Southeast Asia IND
301,204 NSFTV_213 WC 3397 Jamaica Caribbean TRJ
301,252 NSFTV_262 Halwa Gose Red Iraq West Asia AUS
301,269 NSFTV_279 Kon Suito Mongolia East Asia TEJ
301,347 NSFTV_359 Surjamkuhi India South Asia AUS
301,348 NSFTV_360 PTB 30 India South Asia AUS
301,361 NSFTV_376 Breviaristata Portugal West Europe ADMIX
301,364 NSFTV_379 Wanica Suriname South America TRJ

GSOR: Genetic Stocks-Oryza collection identification number

††NSFTV: National Science Foundation-"Exploring the Genetic Basis of Transgressive Variation in Rice" project accession identification number

#Subpopulation identified by fastStructure analysis based on 700,000 SNPs [McCouch et al.; Nature Communications (2016)7:10532]

Aus is coded with AUS, indica with IND, temperate japonica with TEJ, tropical japonica with TRJ and admixed with ADMIX